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contig_metadata

7 rows where bioproject = "PRJNA306153", tax_clade = "Opisthokonta" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 7 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 7 ✖

bioproject 1

  • PRJNA306153 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2927031 2927031 PRJNA306153_S_NODE_2283_length_165_cov_3.522059_g2270_i0 PRJNA306153 2283 165 3.522059 5.81139735 Metazoa 33208 Chordata Chordata 82 2.1e-18   NR XP_039271593.1 7725 g2270 i0 69.8 5.65454545454545 53 16 96.4 0 161 3 13 65 XP_039271593.1 40S ribosomal protein S20-like [Styela clava] diamond 933 82 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
4203532 4203532 PRJNA306153_S_NODE_1784_length_185_cov_4.365385_g1771_i0 PRJNA306153 1784 185 4.365385 8.07596225 Sus scrofa 9823 Chordata Chordata 207 3.19e-49   NTclustered gi|2103|emb|X16513.1| 9823 g1771 i0 94.776 4.83783783783784 134 6 72 1 53 185 236 103 Pig gender-neutral repetitive DNA blastn 895 207 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
8029613 8029613 PRJNA306153_S_NODE_407_length_351_cov_6.068323_g394_i0 PRJNA306153 407 351 6.068323 21.29981373 Sus scrofa 9823 Chordata Chordata 440 6.059999999999999e-119   NTclustered gi|509046|emb|X70941.1| 9823 g394 i0 92.013 54.2364672364672 313 25 100 0 36 348 1 313 S.scrofa DNA for centromere specific motif blastn 19037 440 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
15679124 15679124 PRJNA306153_S_NODE_2773_length_151_cov_2.319672_g2760_i0 PRJNA306153 2773 151 2.319672 3.50270472 Phacochoerus africanus 41426 Chordata Chordata 182 1.51e-41   NTclustered gi|2224989275|ref|XM_047766103.1| 41426 g2760 i0 92.188 1.58278145695364 128 10 85 0 24 151 474 347 PREDICTED: Phacochoerus africanus spidroin-1-like (LOC125119259), mRNA blastn 239 182 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Phacochoerus Phacochoerus africanus
22052889 22052889 PRJNA306153_S_NODE_2698_length_153_cov_3.145161_g2685_i0 PRJNA306153 2698 153 3.145161 4.81209633 Sus scrofa 9823 Chordata Chordata 278 1.9e-70   NTclustered gi|255697262|emb|FP104550.9| 9823 g2685 i0 99.346 549.176470588235 153 1 100 0 1 153 144792 144944 Pig DNA sequence from clone CH242-320P11 on chromosome X, complete sequence blastn 84024 278 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
22739050 22739050 PRJNA306153_S_NODE_2358_length_162_cov_4.601504_g2345_i0 PRJNA306153 2358 162 4.601504 7.45443648 root 1 Root_unresolved Root_unresolved 300 4.36e-77   NTclustered gi|2904934840|gb|PQ737764.1| 10090 g2345 i0 100 349.098765432099 162 0 100 0 1 162 308 469 Mus musculus lncRNA174 lncRNA, complete sequence blastn 56554 300 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
27439765 27439765 PRJNA306153_S_NODE_2663_length_154_cov_3.208000_g2650_i0 PRJNA306153 2663 154 3.208 4.94032 Opisthokonta 33154 Chordata Chordata 45.1 0.00149   NR XP_069463138.1 8296 g2650 i0 87 4.03246753246753 23 3 44.8 0 3 71 217 239 XP_069463138.1 large ribosomal subunit protein eL18 [Ambystoma mexicanum] diamond 621 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Ambystomatidae Ambystoma Ambystoma mexicanum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;