RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA299585" and tax_phylum = "Olpidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Olpidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA299585 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1650080 1650080 PRJNA299585_S_NODE_9602_length_219_cov_2.484211_g9372_i0 PRJNA299585 9602 219 2.484211 5.44042209 Olpidium brassicae 70189 Fungi Fungi 324 3.72e-84   NTclustered gi|311235549|ref|NG_027564.1| 70189 g9372 i0 93.607 99.6575342465753 219 11 100 2 1 219 1943 1728 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 21825 324 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae
13128938 13128938 PRJNA299585_S_NODE_14431_length_161_cov_3.060606_g14201_i0 PRJNA299585 14431 161 3.060606 4.92757566 Olpidium brassicae 70189 Fungi Fungi 215 1.61e-51   NTclustered gi|311235549|ref|NG_027564.1| 70189 g14201 i0 94.928 103.018633540373 138 6 85 1 1 137 3100 3237 Olpidium brassicae DUKE DUH0009361 28S rRNA gene, partial sequence; from reference material blastn 16586 215 1 Eukaryota Opisthokonta Fungi Olpidiomycota Olpidiomycetes Olpidiales Olpidiaceae Olpidium Olpidium brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;