RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA299585", tax_phylum = "Myxococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA299585 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18913155 18913155 PRJNA299585_S_NODE_2895_length_544_cov_4.918447_g2685_i0 PRJNA299585 2895 544 4.918447 26.75635168 Pseudomonadati 3379134 Bacteria Bacteria 405 3.56e-108   NTclustered gi|1985695619|gb|CP069396.1| 83451 g2685 i0 80.292 65.875 548 98 100 9 1 544 931805 931264 Archangium violaceum strain SDU8 chromosome, complete genome blastn 35836 409 0.990220048899755 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
19501114 19501114 PRJNA299585_S_NODE_2556_length_596_cov_4.313933_g2356_i0 PRJNA299585 2556 596 4.313933 25.71104068 Sorangium cellulosum 56 Bacteria Bacteria 281 6.91e-71   NTclustered gi|1338588479|gb|CP012673.1| 56 g2356 i0 76.134 0.998322147651007 595 109 97 27 1 578 1327593 1328171 Sorangium cellulosum strain So ce26 chromosome, complete genome blastn 595 281 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;