RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA299585" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA299585 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8028585 8028585 PRJNA299585_S_NODE_8267_length_247_cov_7.596330_g8037_i0 PRJNA299585 8267 247 7.59633 18.7629351 Fringilla coelebs 37598 Chordata Chordata 52.8 0.022   NTclustered gi|2917610922|emb|OZ228690.1| 37598 g8037 i0 100 0.11336032388664 28 0 11 0 155 182 63098186 63098159 Fringilla coelebs genome assembly, chromosome: Z blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Fringilla Fringilla coelebs
9303379 9303379 PRJNA299585_S_NODE_9268_length_225_cov_4.438776_g9038_i0 PRJNA299585 9268 225 4.438776 9.987246 Apteryx mantelli 2696672 Chordata Chordata 54.7 0.006   NTclustered gi|840016890|emb|LK066393.1| 202946 g9038 i0 100 0.128888888888889 29 0 13 0 179 207 207549 207577 Apteryx australis mantelli genome assembly AptMant0, scaffold scaffold1803 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Apterygiformes Apterygidae Apteryx Apteryx mantelli
19501016 19501016 PRJNA299585_S_NODE_10056_length_210_cov_6.027624_g9826_i0 PRJNA299585 10056 210 6.027624 12.6580104 Spinus spinus 160760 Chordata Chordata 54.7 0.005   NTclustered gi|2917663466|emb|OZ228753.1| 160760 g9826 i0 94.444 0.342857142857143 36 1 17 1 83 117 37205157 37205122 Spinus spinus genome assembly, chromosome: 5 blastn 72 54.7 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Fringillidae Spinus Spinus spinus
21463487 21463487 PRJNA299585_S_NODE_5297_length_350_cov_52.828660_g5067_i0 PRJNA299585 5297 350 52.82866 184.90031 Cheloniidae 8465 Chordata Chordata 52.8 0.033   NTclustered gi|2911500576|emb|OZ223607.1| 8472 g5067 i0 100 0.24 28 0 8 0 320 347 10181252 10181279 Lepidochelys kempii isolate rLepKem1 genome assembly, chromosome: 21 blastn 84 52.8 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Lepidochelys Lepidochelys kempii
27376597 27376597 PRJNA299585_S_NODE_15783_length_151_cov_5.155738_g15553_i0 PRJNA299585 15783 151 5.155738 7.78516438 Chordata 7711 Chordata Chordata 73.2 3.2e-14   NR ADR43854.1 7888 g15553 i0 97.3 568.887417218543 37 1 73.5 0 39 149 9 45 ADR43854.1 cytochrome oxidase subunit 1, partial [Protopterus annectens] diamond 85902 73.9 0.990527740189445 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
27674671 27674671 PRJNA299585_S_NODE_11644_length_188_cov_14.578616_g11414_i0 PRJNA299585 11644 188 14.578616 27.40779808 Staurois parvus 386267 Chordata Chordata 43.1 0.0086   NR CAI9578362.1 386267 g11414 i0 51.5 0.526595744680851 33 11 44.7 1 59 142 139 171 CAI9578362.1 unnamed protein product [Staurois parvus] diamond 99 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27863796 27863796 PRJNA299585_S_NODE_11785_length_186_cov_14.464968_g11555_i0 PRJNA299585 11785 186 14.464968 26.90484048 Bufotes viridis 30338 Chordata Chordata 47.8 2.88e-4   NR CAK8629749.1 30338 g11555 i0 72.4 0.467741935483871 29 8 46.8 0 32 118 336 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 87 47.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
30927483 30927483 PRJNA299585_S_NODE_3414_length_484_cov_5.751648_g3191_i0 PRJNA299585 3414 484 5.751648 27.83797632 Actinopterygii environmental sample 1184603 Chordata Chordata 229 2.54e-73   NR ASS34268.1 1184603 g3191 i0 96 648.607438016529 126 5 78.1 0 378 1 88 213 ASS34268.1 cytochrome oxidase subunit 1, partial [Actinopterygii environmental sample] diamond 313926 229 1 Eukaryota Opisthokonta Metazoa Chordata         Actinopterygii environmental sample
32382191 32382191 PRJNA299585_S_NODE_10739_length_200_cov_13.859649_g10509_i0 PRJNA299585 10739 200 13.859649 27.719298 Bufotes viridis 30338 Chordata Chordata 42 0.039   NR CAK8629749.1 30338 g10509 i0 55.6 0.54 36 16 54 0 169 62 329 364 CAK8629749.1 Interleukin-1 receptor type 1 [Bufotes viridis] diamond 108 42 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;