RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA293022" and tax_phylum = "Ignavibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA293022 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2924023 2924023 PRJNA293022_P_NODE_56343_length_185_cov_3.169118_g55606_i0 PRJNA293022 56343 185 3.169118 5.8628683 Melioribacteraceae bacterium 2614255 Bacteria Bacteria 108 3.32e-19   NTclustered gi|2621786307|emb|OY782765.1| 2614255 g55606 i0 78.333 41.5243243243243 180 30 95 8 11 185 2845674 2845499 MAG: Melioribacteraceae bacterium isolate b49f5fa7-6043-4eb4-88a3-53a29b1f0925 genome assembly, chromosome: 1 blastn 7682 108 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Melioribacteraceae   Melioribacteraceae bacterium
25285830 25285830 PRJNA293022_P_NODE_55760_length_186_cov_3.007299_g55023_i0 PRJNA293022 55760 186 3.007299 5.59357614 Pseudomonadati 3379134 Bacteria Bacteria 250 5.25e-62   NTclustered gi|1938788434|gb|CP054181.1| 2053306 g55023 i0 91.667 986.494623655914 180 15 97 0 5 184 1603644 1603465 Ignavibacteria bacterium isolate H1_BAC2 chromosome blastn 183488 250 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria       Ignavibacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;