RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA293022" and tax_phylum = "Echinodermata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Echinodermata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA293022 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16362304 16362304 PRJNA293022_P_NODE_83213_length_152_cov_3.504854_g82476_i0 PRJNA293022 83213 152 3.504854 5.32737808 Metazoa 33208 Echinodermata other_Eukaryota 56.5 0.001   NTclustered gi|2707436824|ref|XM_064103603.1| 7653 g82476 i0 92.308 1.73684210526316 39 3 26 0 112 150 2700 2738 PREDICTED: Lytechinus pictus ankyrin repeat and SAM domain-containing protein 3-like (LOC129266305), transcript variant X1, mRNA blastn 264 56.5 1 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Temnopleuroida Toxopneustidae Lytechinus Lytechinus pictus
32872773 32872773 PRJNA293022_P_NODE_45460_length_207_cov_1.303797_g44723_i0 PRJNA293022 45460 207 1.303797 2.69885979 Metazoa 33208 Echinodermata other_Eukaryota 45.4 0.00234   NR XP_030850438.1 7668 g44723 i0 51.2 4.42028985507246 43 20 60.9 1 199 74 216 258 XP_030850438.1 40S ribosomal protein S4 [Strongylocentrotus purpuratus] diamond 915 45.8 0.991266375545852 Eukaryota Opisthokonta Metazoa Echinodermata Echinoidea Camarodonta Strongylocentrotidae Strongylocentrotus Strongylocentrotus purpuratus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;