RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA293022" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA293022 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1059696 1059696 PRJNA293022_P_NODE_3101_length_770_cov_3.586685_g2578_i0 PRJNA293022 3101 770 3.586685 27.6174745 Fimbriimonas 1005038 Bacteria Bacteria 867 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g2578 i0 87.13 322.096103896104 777 84 99 14 1 767 27461 28231 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 248014 867 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
6162438 6162438 PRJNA293022_P_NODE_12485_length_404_cov_4.670423_g11748_i0 PRJNA293022 12485 404 4.670423 18.86850892 Fimbriimonas 1005038 Bacteria Bacteria 549 1.1299999999999997e-151   NTclustered gi|663071213|gb|CP007139.1| 661478 g11748 i0 91.155 927.232673267327 407 33 100 2 1 404 26826 27232 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 374602 549 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
6162524 6162524 PRJNA293022_P_NODE_57825_length_183_cov_1.470149_g57088_i0 PRJNA293022 57825 183 1.470149 2.69037267 Fimbriimonas 1005038 Bacteria Bacteria 233 5.19e-57   NTclustered gi|663071213|gb|CP007139.1| 661478 g57088 i0 90 108.371584699454 180 18 98 0 1 180 29563 29742 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 19832 233 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
17637287 17637287 PRJNA293022_P_NODE_17474_length_341_cov_3.513699_g16737_i0 PRJNA293022 17474 341 3.513699 11.98171359 Bacteria 2 Bacteria Bacteria 608 1.5199999999999993e-169   NTclustered gi|95115294|gb|DQ501336.1| 157466 g16737 i0 98.827 100.912023460411 341 4 100 0 1 341 1297 957 Uncultured candidate division OP10 bacterium clone ST11-34 16S ribosomal RNA gene, partial sequence blastn 34411 614 0.990228013029316 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;