RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA293022", tax_kingdom = "Metazoa" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 10 ✖

tax_kingdom 1

  • Metazoa · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA293022 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4887667 4887667 PRJNA293022_P_NODE_48644_length_200_cov_1.331126_g47907_i0 PRJNA293022 48644 200 1.331126 2.662252 Adinetidae 104780 Rotifera other_Eukaryota 364 1.96e-96   NTclustered gi|2537903787|gb|KM043252.2| 104782 g47907 i0 100 98.5 197 0 99 0 3 199 709 905 Adineta vaga voucher AD005 18S ribosomal RNA gene, partial sequence blastn 19700 364 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
5476817 5476817 PRJNA293022_P_NODE_55265_length_187_cov_2.246377_g54528_i0 PRJNA293022 55265 187 2.246377 4.20072499 Adineta vaga 104782 Rotifera other_Eukaryota 320 3.97e-83   NTclustered gi|259129963|gb|GQ398061.1| 104782 g54528 i0 97.838 3.24064171122995 185 4 99 0 1 185 10371 10187 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 606 320 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
7437586 7437586 PRJNA293022_P_NODE_21786_length_304_cov_39.666667_g21049_i0 PRJNA293022 21786 304 39.666667 120.58666768 Ploima 84394 Rotifera other_Eukaryota 484 2.36e-132   NTclustered gi|61200802|gb|AY829083.1| 96446 g21049 i0 95.695 97.9177631578947 302 12 99 1 1 302 1727 1427 Lecane bulla 28S ribosomal RNA gene, partial sequence blastn 29767 484 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lecanidae Lecane Lecane bulla
8026823 8026823 PRJNA293022_P_NODE_9707_length_459_cov_128.778049_g8974_i0 PRJNA293022 9707 459 128.778049 591.09124491 Lepadella patella 231622 Rotifera other_Eukaryota 647 0   NTclustered gi|83285192|gb|DQ297739.1| 231622 g8974 i0 92.511 77.9520697167756 454 31 98 3 6 457 750 298 Lepadella patella 28S ribosomal RNA gene, partial sequence blastn 35780 647 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
10577454 10577454 PRJNA293022_P_NODE_9069_length_475_cov_6.103286_g8339_i0 PRJNA293022 9069 475 6.103286 28.9906085 Brachionus quadridentatus 183142 Rotifera other_Eukaryota 102 4.53e-17   NTclustered gi|950655830|gb|KT151641.1| 183142 g8339 i0 75.285 5.61473684210526 263 40 53 23 223 474 293 541 Brachionus quadridentatus 12S ribosomal RNA gene, partial sequence; mitochondrial blastn 2667 102 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus quadridentatus
11262885 11262885 PRJNA293022_P_NODE_54809_length_188_cov_1.705036_g54072_i0 PRJNA293022 54809 188 1.705036 3.20546768 Metazoa 33208 Rotifera other_Eukaryota 339 1.1e-88   NTclustered gi|37785582|gb|AY210469.1| 96448 g54072 i0 99.462 69.7074468085106 186 1 99 0 1 186 1804 1619 Philodina roseola 28S ribosomal RNA gene, partial sequence blastn 13105 339 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Philodina Philodina roseola
20185709 20185709 PRJNA293022_P_NODE_15436_length_363_cov_4.585987_g14699_i0 PRJNA293022 15436 363 4.585987 16.64713281 Opisthokonta 33154 Rotifera other_Eukaryota 645 1.2399999999999994e-180   NTclustered gi|259129963|gb|GQ398061.1| 104782 g14699 i0 98.892 78.0633608815427 361 4 99 0 3 363 6650 7010 Adineta vaga 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 28337 645 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Adinetida Adinetidae Adineta Adineta vaga
20774848 20774848 PRJNA293022_P_NODE_61097_length_177_cov_38.210938_g60360_i0 PRJNA293022 61097 177 38.210938 67.63336026 Brachionus patulus 160652 Rotifera other_Eukaryota 305 1.04e-78   NTclustered gi|61200806|gb|AY829084.1| 160652 g60360 i0 98.276 98.0677966101695 174 3 98 0 2 175 1301 1128 Brachionus patulus 28S ribosomal RNA gene, partial sequence blastn 17358 305 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus patulus
22049823 22049823 PRJNA293022_P_NODE_60418_length_178_cov_14.364341_g59681_i0 PRJNA293022 60418 178 14.364341 25.56852698 Lepadella patella 231622 Rotifera other_Eukaryota 320 3.74e-83   NTclustered gi|166014123|gb|EU252112.1| 497825 g59681 i0 99.432 97.8651685393258 176 1 99 0 3 178 73 248 Lepadella patella oblonga internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 17420 320 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Lepadellidae Lepadella Lepadella patella
24011644 24011644 PRJNA293022_P_NODE_5159_length_620_cov_10.220665_g4489_i0 PRJNA293022 5159 620 10.220665 63.368123 Ploima 84394 Rotifera other_Eukaryota 359 3.2399999999999996e-94   NTclustered gi|1859640894|gb|MN970216.1| 360698 g4489 i0 78.388 24.4564516129032 583 105 93 19 28 602 11951 12520 Proales similis mitochondrion, complete genome blastn 15163 361 0.994459833795014 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;