RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA293022", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA293022 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8712326 8712326 PRJNA293022_P_NODE_11547_length_421_cov_1.911290_g10810_i0 PRJNA293022 11547 421 1.91129 8.0465309 Metazoa 33208 Nematoda Nematoda 159 2.3199999999999993e-34   NTclustered gi|158821894|gb|EU195958.1| 473172 g10810 i0 92.105 27.3182897862233 114 7 27 2 290 401 1892 2005 Protorhabditis sp. JB122 28S ribosomal RNA gene, partial sequence blastn 11501 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Protorhabditis Protorhabditis sp. JB122
15676226 15676226 PRJNA293022_P_NODE_77133_length_163_cov_0.912281_g76396_i0 PRJNA293022 77133 163 0.912281 1.48701803 Trichinella spiralis 6334 Nematoda Nematoda 128 2.1899999999999998e-25   NTclustered gi|339233157|ref|XM_003381648.1| 6334 g76396 i0 83.099 2.20245398773006 142 23 87 1 18 158 1024 883 Trichinella spiralis 26S protease regulatory subunit 6A (Tsp_07392) mRNA, complete cds blastn 359 128 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichinellidae Trichinella Trichinella spiralis
23325285 23325285 PRJNA293022_P_NODE_30559_length_254_cov_1.243902_g29822_i0 PRJNA293022 30559 254 1.243902 3.15951108 Hirschmanniella sp. 1 SBJ-2017 1969345 Nematoda Nematoda 159 1.32e-34   NTclustered gi|1159842617|gb|KY773577.1| 1969345 g29822 i0 89.231 52.8700787401575 130 11 51 3 1 129 760 633 Hirschmanniella sp. 1 SBJ-2017 strain HFL1 large subunit ribosomal RNA gene, partial sequence blastn 13429 159 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Hirschmanniella Hirschmanniella sp. 1 SBJ-2017

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;