RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA293022", tax_kingdom = "Bacillati" and tax_phylum = "Vulcanimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA293022 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18224917 18224917 PRJNA293022_P_NODE_31615_length_249_cov_1.750000_g30878_i0 PRJNA293022 31615 249 1.75 4.3575 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 383 7.04e-102   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g30878 i0 95.082 199.393574297189 244 10 99 2 4 247 5033046 5032805 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 49649 383 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
20774997 20774997 PRJNA293022_P_NODE_8917_length_480_cov_2.784223_g8187_i0 PRJNA293022 8917 480 2.784223 13.3642704 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 843 0   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g8187 i0 98.333 496.9875 480 8 100 0 1 480 5033283 5033762 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 238554 843 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
23325367 23325367 PRJNA293022_P_NODE_52739_length_192_cov_1.132867_g52002_i0 PRJNA293022 52739 192 1.132867 2.17510464 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 259 9.08e-65   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g52002 i0 91.935 504.484375 186 13 96 2 1 185 5033484 5033300 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 96861 259 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
24599251 24599251 PRJNA293022_P_NODE_10300_length_445_cov_33.338384_g9565_i0 PRJNA293022 10300 445 33.338384 148.3558088 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 749 0   NTclustered gi|2202949261|emb|OV972893.1| 3107663 g9565 i0 97.079 592.494382022472 445 11 100 2 1 445 5032364 5032806 MAG: Candidatus Eremiobacteraeota bacterium isolate E.malaspinii_MAG_MP1648_PBLIHF genome assembly, chromosome: 1 blastn 263660 749 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;