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contig_metadata

10 rows where bioproject = "PRJNA293022", tax_clade = "core chlorophytes" and tax_kingdom = "Viridiplantae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Viridiplantae · 10 ✖

tax_clade 1

  • core chlorophytes · 10 ✖

bioproject 1

  • PRJNA293022 · 10 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4887682 4887682 PRJNA293022_P_NODE_58384_length_182_cov_1.548872_g57647_i0 PRJNA293022 58384 182 1.548872 2.81894704 root 1 Root_unresolved Root_unresolved 176 8.8e-40   NTclustered gi|2507491536|dbj|LC749599.1| 51714 g57647 i0 84.916 96.8131868131868 179 22 97 5 3 178 113026 112850 Volvox africanus NIES-4468 DNA, SD-like region blastn 17620 176 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox africanus
4887687 4887687 PRJNA293022_P_NODE_60144_length_179_cov_1.753846_g59407_i0 PRJNA293022 60144 179 1.753846 3.13938434 Eukaryota 2759 Plants Plants 54.7 0.004   NTclustered gi|2667916624|gb|OQ848499.1| 173371 g59407 i0 100 0.324022346368715 29 0 16 0 135 163 9596 9568 Cephaleuros virescens chloroplast, complete genome blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Trentepohliales Trentepohliaceae Cephaleuros Cephaleuros virescens
5476663 5476663 PRJNA293022_P_NODE_21305_length_308_cov_2.250965_g20568_i0 PRJNA293022 21305 308 2.250965 6.9329722 Haematococcus lacustris 44745 Plants Plants 305 2e-78   NTclustered gi|1279575454|gb|MF683078.1| 44745 g20568 i0 85.065 173.431818181818 308 36 97 8 1 300 3585 3280 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 53417 305 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
8712462 8712462 PRJNA293022_P_NODE_76527_length_163_cov_2.201754_g75790_i0 PRJNA293022 76527 163 2.201754 3.58885902 root 1 Root_unresolved Root_unresolved 211 2.12e-50   NTclustered gi|1279575452|gb|MF683076.1| 162062 g75790 i0 90.184 210.509202453988 163 14 99 2 1 162 3477 3316 Aegagropila linnaei 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 34313 211 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Cladophorales Pithophoraceae Aegagropila Aegagropila linnaei
11262833 11262833 PRJNA293022_P_NODE_32969_length_244_cov_0.943590_g32232_i0 PRJNA293022 32969 244 0.94359 2.3023596 Chlamydomonas 3052 Plants Plants 392 1.14e-104   NTclustered gi|397121|emb|X68924.1| 133709 g32232 i0 95.868 150.25 242 10 99 0 3 244 959 1200 Chloroplast Chlamydomonas sp. 66.72 rrnL gene, exon 2 blastn 36661 392 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas sp. 66.72
13813157 13813157 PRJNA293022_P_NODE_72271_length_166_cov_0.888889_g71534_i0 PRJNA293022 72271 166 0.888889 1.47555574 root 1 Root_unresolved Root_unresolved 292 7.52e-75   NTclustered gi|1929550831|gb|MN794237.1| 3111 g71534 i0 98.78 1.97590361445783 164 2 99 0 1 164 217 54 Prototheca wickerhamii strain DBVPG mitochondrion, complete genome blastn 328 292 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Prototheca Prototheca wickerhamii
16362249 16362249 PRJNA293022_P_NODE_66133_length_170_cov_2.446281_g65396_i0 PRJNA293022 66133 170 2.446281 4.1586777 root 1 Root_unresolved Root_unresolved 311 2.12e-80   NTclustered gi|1279575454|gb|MF683078.1| 44745 g65396 i0 100 97.7176470588235 168 0 99 0 1 168 328 161 Haematococcus lacustris 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence; chloroplast blastn 16612 311 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Haematococcaceae Haematococcus Haematococcus lacustris
16362256 16362256 PRJNA293022_P_NODE_68833_length_168_cov_1.025210_g68096_i0 PRJNA293022 68833 168 1.02521 1.7223528 Chlorophyceae 3166 Plants Plants 274 2.7699999999999997e-69   NTclustered gi|1432231416|gb|MH654823.1| 332213 g68096 i0 96.933 97.2559523809524 163 5 97 0 3 165 525 687 Chlorosarcinopsis eremi strain MKA.28 5.8S ribosomal RNA gene, partial sequence; internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 16339 274 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlorosarcinales Chlorosarcinaceae Chlorosarcinopsis Chlorosarcinopsis eremi
19499287 19499287 PRJNA293022_P_NODE_62956_length_175_cov_1.222222_g62219_i0 PRJNA293022 62956 175 1.222222 2.1388885 Chloroidium sp. KL-2023a 3031248 Plants Plants 298 1.72e-76   NTclustered gi|2450595352|gb|ON986219.1| 3031248 g62219 i0 97.688 145.394285714286 173 4 99 0 1 173 220528 220356 Chloroidium sp. KL-2023a clone 2023 chloroplast, complete genome blastn 25444 298 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Chloroidium Chloroidium sp. KL-2023a
21461446 21461446 PRJNA293022_P_NODE_30377_length_254_cov_5.795122_g29640_i0 PRJNA293022 30377 254 5.795122 14.71960988 Eukaryota 2759 Plants Plants 466 6.95e-127   NTclustered gi|1714003650|gb|MN243923.1| 3079 g29640 i0 100 99.1141732283465 252 0 99 0 3 254 577 828 Chlorella sp. isolate CAVR01 small subunit ribosomal RNA gene, partial sequence blastn 25175 466 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;