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contig_metadata

18 rows where bioproject = "PRJNA293022", tax_clade = "Sar" and tax_phylum = "Oomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 18 ✖

tax_clade 1

  • Sar · 18 ✖

bioproject 1

  • PRJNA293022 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2334910 2334910 PRJNA293022_P_NODE_22802_length_297_cov_2.266129_g22065_i0 PRJNA293022 22802 297 2.266129 6.73040313 Lagenidium 4802 SAR_Eukaryotes SAR_Eukaryotes 529 1.0499999999999996e-145   NTclustered gi|918464127|gb|KT257366.1| 884619 g22065 i0 98.983 99.3232323232323 295 3 99 0 1 295 4003 3709 Lagenidium deciduum isolate F10-KC59 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 29499 529 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium deciduum
2334992 2334992 PRJNA293022_P_NODE_65982_length_170_cov_3.685950_g65245_i0 PRJNA293022 65982 170 3.68595 6.266115 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 267 4.659999999999999e-67   NTclustered gi|2661426469|ref|XR_009934769.1| 403677 g65245 i0 95.238 98.7705882352941 168 8 99 0 3 170 1626 1793 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33375), rRNA blastn 16791 267 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
4200338 4200338 PRJNA293022_P_NODE_20764_length_312_cov_2.707224_g20027_i0 PRJNA293022 20764 312 2.707224 8.44653888 Thraustotheca clavata 74557 SAR_Eukaryotes SAR_Eukaryotes 228 4.519999999999999e-55   NTclustered gi|533310373|ref|NC_022179.1| 74557 g20027 i0 83.399 50.4391025641026 253 35 81 4 4 255 13867 14113 Thraustotheca clavata mitochondrion, complete genome blastn 15737 228 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata
4200619 4200619 PRJNA293022_P_NODE_77044_length_163_cov_0.912281_g76307_i0 PRJNA293022 77044 163 0.912281 1.48701803 Phytophthora nicotianae 4792 SAR_Eukaryotes SAR_Eukaryotes 154 3.62e-33   NTclustered gi|675179278|ref|XM_008900276.1| 761204 g76307 i0 86.861 1.69325153374233 137 18 84 0 21 157 637 501 Phytophthora parasitica INRA-310 hypothetical protein mRNA blastn 276 154 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora nicotianae
8026512 8026512 PRJNA293022_P_NODE_21247_length_308_cov_5.521236_g20510_i0 PRJNA293022 21247 308 5.521236 17.00540688 Lagenidium deciduum 884619 SAR_Eukaryotes SAR_Eukaryotes 566 8.299999999999999e-157   NTclustered gi|2522855646|gb|OR165096.1| 884619 g20510 i0 100 98.3279220779221 306 0 99 0 3 308 10 315 Lagenidium deciduum isolate UTHSCSA DI23-100 large subunit ribosomal RNA gene, partial sequence blastn 30285 566 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium deciduum
10577304 10577304 PRJNA293022_P_NODE_59669_length_180_cov_1.358779_g58932_i0 PRJNA293022 59669 180 1.358779 2.4458022 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 302 1.37e-77   NTclustered gi|299830435|ref|NC_014280.1| 2052682 g58932 i0 97.191 100.877777777778 178 5 99 0 1 178 8466 8643 Pythium ultimum mitochondrion, complete genome blastn 18158 302 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
15087292 15087292 PRJNA293022_P_NODE_3452_length_736_cov_6.614265_g2886_i0 PRJNA293022 3452 736 6.614265 48.6809904 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 1074 0   NTclustered gi|2661426423|ref|XR_009934737.1| 403677 g2886 i0 93.089 100.319293478261 738 44 99 7 3 735 1786 2521 Phytophthora infestans T30-4 28S ribosomal RNA (PITG_33343), partial rRNA blastn 73835 1081 0.993524514338575 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora infestans
15675930 15675930 PRJNA293022_P_NODE_19693_length_321_cov_1.676471_g18956_i0 PRJNA293022 19693 321 1.676471 5.38147191 Globisporangium ultimum 2052682 SAR_Eukaryotes SAR_Eukaryotes 540 5.27e-149   NTclustered gi|269812125|gb|GU138663.1| 2052682 g18956 i0 97.196 103.03738317757 321 6 99 3 2 321 9325 9007 Pythium ultimum culture-collection CBS:398.51 mitochondrion, complete genome blastn 33075 540 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium Globisporangium ultimum
17637308 17637308 PRJNA293022_P_NODE_28494_length_263_cov_6.158879_g27757_i0 PRJNA293022 28494 263 6.158879 16.19785177 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 483 7.179999999999997e-132   NTclustered gi|2260012693|gb|ON860583.1| 135482 g27757 i0 100 99.2433460076046 261 0 99 0 3 263 44 304 Myzocytiopsis humana voucher CCIBt4304 small subunit ribosomal RNA gene, partial sequence blastn 26101 483 1 Eukaryota Sar   Oomycota   Myzocytiopsidales Myzocytiopsidaceae Myzocytiopsis Myzocytiopsis humana
21461407 21461407 PRJNA293022_P_NODE_15497_length_362_cov_6.482428_g14760_i0 PRJNA293022 15497 362 6.482428 23.46638936 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 649 0   NTclustered gi|2922|emb|X54266.1| 4803 g14760 i0 99.167 99.414364640884 360 3 99 0 3 362 638 997 Lagenidium giganteum 16S ribosomal RNA blastn 35988 654 0.992354740061162 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
23325315 23325315 PRJNA293022_P_NODE_38459_length_225_cov_2.062500_g37722_i0 PRJNA293022 38459 225 2.0625 4.640625 Paralagenidium karlingii 1440115 SAR_Eukaryotes SAR_Eukaryotes 141 4.15e-29   NTclustered gi|2554484921|ref|NC_080886.1| 1440115 g37722 i0 90.09 47.2977777777778 111 8 49 3 65 174 41764 41656 Paralagenidium karlingii isolate 19-09020 mitochondrion, complete genome blastn 10642 141 1 Eukaryota Sar   Oomycota Peronosporomycetes     Paralagenidium Paralagenidium karlingii
25285773 25285773 PRJNA293022_P_NODE_2340_length_872_cov_4.156744_g1885_i0 PRJNA293022 2340 872 4.156744 36.24680768 Peronosporomycetes 3418804 SAR_Eukaryotes SAR_Eukaryotes 1358 0   NTclustered gi|2026389858|gb|MT032128.1| 4796 g1885 i0 95.233 100.711009174312 860 37 99 4 13 872 249 1104 Phytophthora palmivora mitochondrion, complete genome blastn 87820 1369 0.991964937910884 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora palmivora
27565564 27565564 PRJNA293022_P_NODE_52204_length_193_cov_1.076389_g51467_i0 PRJNA293022 52204 193 1.076389 2.07743077 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 84.3 3.31e-17   NR XP_024573891.1 4781 g51467 i0 72.5 9.55958549222798 51 14 79.3 0 179 27 97 147 XP_024573891.1 60s ribosomal protein l27a [Plasmopara halstedii] diamond 1845 84.7 0.995277449822904 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii
27643062 27643062 PRJNA293022_P_NODE_70864_length_167_cov_0.881356_g70127_i0 PRJNA293022 70864 167 0.881356 1.47186452 Lagenidium giganteum 4803 SAR_Eukaryotes SAR_Eukaryotes 75.1 4.92e-14   NR DBA01199.1 4803 g70127 i0 61.8 0.988023952095808 55 21 98.8 0 166 2 52 106 DBA01199.1 TPA: hypothetical protein N0F65_002334 [Lagenidium giganteum] diamond 165 75.1 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Lagenidium Lagenidium giganteum
27976134 27976134 PRJNA293022_P_NODE_77065_length_163_cov_0.912281_g76328_i0 PRJNA293022 77065 163 0.912281 1.48701803 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 97.8 3.8600000000000003e-22   NR KAH9108398.1 100861 g76328 i0 84.9 4.87730061349693 53 8 97.5 0 160 2 382 434 KAH9108398.1 hypothetical protein AeMF1_016428 [Aphanomyces euteiches] diamond 795 97.8 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
28400651 28400651 PRJNA293022_P_NODE_67806_length_169_cov_0.866667_g67069_i0 PRJNA293022 67806 169 0.866667 1.46466723 [Pythium] brassicae (nom. inval.) 1485010 SAR_Eukaryotes SAR_Eukaryotes 68.6 1.44e-12   NR TYZ66174.1 1485010 g67069 i0 70.2 5.98224852071006 57 15 99.4 2 168 1 36 91 TYZ66174.1 hypothetical protein PybrP1_001059, partial [[Pythium] brassicae (nom. inval.)] diamond 1011 68.6 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Globisporangium [Pythium] brassicae (nom. inval.)
29127092 29127092 PRJNA293022_P_NODE_21489_length_307_cov_1.189922_g20752_i0 PRJNA293022 21489 307 1.189922 3.65306054 Albugo candida 65357 SAR_Eukaryotes SAR_Eukaryotes 63.5 7e-10   NR CCI43730.1 65357 g20752 i0 39.6 1.97394136807818 101 44 97.7 3 1 300 90 174 CCI43730.1 unnamed protein product [Albugo candida] diamond 606 63.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo candida
32872777 32872777 PRJNA293022_P_NODE_75320_length_164_cov_0.904348_g74583_i0 PRJNA293022 75320 164 0.904348 1.48313072 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 89.7 7.5e-21   NR XP_024579184.1 4781 g74583 i0 78 22.8292682926829 50 11 91.5 0 150 1 85 134 XP_024579184.1 wd domain-containing protein [Plasmopara halstedii] diamond 3744 90.5 0.991160220994475 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Plasmopara Plasmopara halstedii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;