RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA293022", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 2 ✖

bioproject 1

  • PRJNA293022 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8712448 8712448 PRJNA293022_P_NODE_71227_length_167_cov_0.881356_g70490_i0 PRJNA293022 71227 167 0.881356 1.47186452 Methanobrevibacter 2172 Archaea Archaea 296 5.86e-76   NTclustered gi|968564921|gb|CP011266.1| 230361 g70490 i0 99.387 139.311377245509 163 1 98 0 3 165 542557 542395 Methanobrevibacter millerae strain SM9, complete genome blastn 23265 296 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter millerae
23325492 23325492 PRJNA293022_P_NODE_75719_length_164_cov_0.904348_g74982_i0 PRJNA293022 75719 164 0.904348 1.48313072 Methanobrevibacter sp. TLL-48-HuF1 2870563 Archaea Archaea 191 2.78e-44   NTclustered gi|2246976648|gb|CP081485.1| 2870563 g74982 i0 88.125 19.1768292682927 160 19 98 0 1 160 774267 774108 Methanobrevibacter sp. TLL-48-HuF1 chromosome, complete genome blastn 3145 191 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp. TLL-48-HuF1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;