RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA293022", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 5 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 5 ✖

bioproject 1

  • PRJNA293022 · 5 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2334944 2334944 PRJNA293022_P_NODE_41942_length_215_cov_3.668675_g41205_i0 PRJNA293022 41942 215 3.668675 7.88765125 Rhodothermales 1853224 Bacteria Bacteria 231 2.27e-56   NTclustered gi|1167574847|gb|CP020382.1| 1779382 g41205 i0 86.574 252.13488372093 216 22 99 5 2 213 2906819 2906607 Rhodothermaceae bacterium RA chromosome, complete genome blastn 54209 231 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae   Rhodothermaceae bacterium RA
4200322 4200322 PRJNA293022_P_NODE_17404_length_342_cov_1.733788_g16667_i0 PRJNA293022 17404 342 1.733788 5.92955496 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 470 7.53e-128   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g16667 i0 91.404 455.011695906433 349 21 100 8 1 342 806442 806788 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 155614 470 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
4200352 4200352 PRJNA293022_P_NODE_24184_length_287_cov_3.226891_g23447_i0 PRJNA293022 24184 287 3.226891 9.26117717 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 377 3.85e-100   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g23447 i0 90.526 482.310104529617 285 27 99 0 3 287 805359 805643 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 138423 377 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
11262836 11262836 PRJNA293022_P_NODE_36409_length_231_cov_4.906593_g35672_i0 PRJNA293022 36409 231 4.906593 11.33422983 Rubrivirga 1434037 Bacteria Bacteria 403 4.95e-108   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g35672 i0 98.261 318.190476190476 230 4 99 0 2 231 806137 806366 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 73502 403 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871
22049629 22049629 PRJNA293022_P_NODE_19838_length_320_cov_1.405904_g19101_i0 PRJNA293022 19838 320 1.405904 4.4988928 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 267 9.85e-67   NTclustered gi|2874254104|emb|OY970187.1| 2838334 g19101 i0 84.559 60.009375 272 39 85 3 1 272 1307956 1307688 MAG: Rubricoccaceae bacterium isolate MFD03250.bin.2.52 genome assembly, chromosome: 1 blastn 19203 267 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;