RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA293022", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA293022 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5476690 5476690 PRJNA293022_P_NODE_2725_length_813_cov_1.431937_g2233_i0 PRJNA293022 2725 813 1.431937 11.64164781 Pseudomonadati 3379134 Bacteria Bacteria 204 2.45e-63   NR WP_303680833.1 1100 g2233 i0 88 0.874538745387454 117 14 43.2 0 110 460 1 117 WP_303680833.1 MarR family EPS-associated transcriptional regulator [Pelodictyon luteolum] diamond 711 204 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Pelodictyon Pelodictyon luteolum
27516566 27516566 PRJNA293022_P_NODE_16263_length_354_cov_1.786885_g15526_i0 PRJNA293022 16263 354 1.786885 6.3255729 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 102 1.21e-22   NR NMW22525.1 2067991 g15526 i0 52.2 0.974576271186441 115 51 96.6 3 344 3 359 470 NMW22525.1 DUF4214 domain-containing protein [Chlorobiaceae bacterium] diamond 345 102 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium
29947898 29947898 PRJNA293022_P_NODE_40971_length_218_cov_1.526627_g40234_i0 PRJNA293022 40971 218 1.526627 3.32804686 Chlorobiaceae bacterium 2067991 Bacteria Bacteria 65.1 3.14e-10   NR NTV92273.1 2067991 g40234 i0 50 0.798165137614679 58 29 79.8 0 8 181 256 313 NTV92273.1 FAD-dependent oxidoreductase [Chlorobiaceae bacterium] diamond 174 65.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae   Chlorobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;