RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

27 rows where bioproject = "PRJNA293022", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 27 ✖

tax_clade 1

  • Amoebozoa · 27 ✖

bioproject 1

  • PRJNA293022 · 27 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1059840 1059840 PRJNA293022_P_NODE_9601_length_462_cov_6.997579_g8869_i0 PRJNA293022 9601 462 6.997579 32.32881498 Planopodium 2823620 Discosea other_Eukaryota 656 0   NTclustered gi|330902849|gb|JF298243.1| 2773111 g8869 i0 92.826 45.978354978355 460 22 99 11 1 457 498 47 Ovalopodium desertum clone 3701 18S ribosomal RNA gene, partial sequence blastn 21242 662 0.990936555891239 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
1647945 1647945 PRJNA293022_P_NODE_20802_length_312_cov_1.539924_g20065_i0 PRJNA293022 20802 312 1.539924 4.80456288 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 527 3.9799999999999996e-145   NTclustered gi|300078498|gb|GU001160.1| 5755 g20065 i0 97.72 37.9230769230769 307 6 98 1 4 310 7818 7513 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 11832 527 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1647981 1647981 PRJNA293022_P_NODE_26402_length_274_cov_4.773333_g25665_i0 PRJNA293022 26402 274 4.773333 13.07893242 Ripella sp. GP2 1217115 Discosea other_Eukaryota 409 1.3e-109   NTclustered gi|399764204|gb|JQ271715.1| 1217115 g25665 i0 93.796 99.7992700729927 274 14 99 2 1 272 287 15 Ripella sp. GP2 18S ribosomal RNA gene, partial sequence blastn 27345 409 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. GP2
2923840 2923840 PRJNA293022_P_NODE_10703_length_438_cov_1.352185_g9968_i0 PRJNA293022 10703 438 1.352185 5.9225703 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 494 5.85e-135   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g9968 i0 88.78 80.8424657534247 410 36 92 8 34 438 33760 34164 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 35409 494 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
2923849 2923849 PRJNA293022_P_NODE_12743_length_400_cov_11.168091_g12006_i0 PRJNA293022 12743 400 11.168091 44.672364 Planopodium desertum 2773111 Discosea other_Eukaryota 719 0   NTclustered gi|330902849|gb|JF298243.1| 2773111 g12006 i0 99.246 48.83 398 3 99 0 1 398 1030 633 Ovalopodium desertum clone 3701 18S ribosomal RNA gene, partial sequence blastn 19532 719 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
5476675 5476675 PRJNA293022_P_NODE_24425_length_286_cov_1.303797_g23688_i0 PRJNA293022 24425 286 1.303797 3.72885942 Paradermamoeba levis 1072175 Discosea other_Eukaryota 300 8.55e-77   NTclustered gi|342309910|gb|JN247435.1| 1072175 g23688 i0 87.018 47.0104895104895 285 14 99 16 1 284 441 179 Paradermamoeba levis 18S ribosomal RNA gene, partial sequence; mitochondrial blastn 13445 300 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Paradermamoeba Paradermamoeba levis
7437650 7437650 PRJNA293022_P_NODE_4846_length_637_cov_6.198980_g4187_i0 PRJNA293022 4846 637 6.19898 39.4875026 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 237 1.6299999999999997e-57   NTclustered gi|300078499|gb|GU001161.1| 197531 g4187 i0 76.015 66.6734693877551 517 90 80 25 127 637 1766 2254 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 42471 237 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
9301257 9301257 PRJNA293022_P_NODE_16928_length_346_cov_11.895623_g16191_i0 PRJNA293022 16928 346 11.895623 41.15885558 Planopodium haveli 2773112 Discosea other_Eukaryota 424 6.02e-114   NTclustered gi|1914009730|gb|MT975620.1| 2773112 g16191 i0 89.106 41.5346820809249 358 15 97 10 1 337 1021 667 Planopodium haveli clone 2 18S ribosomal RNA gene, complete sequence blastn 14371 424 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium haveli
10577419 10577419 PRJNA293022_P_NODE_76989_length_163_cov_1.043860_g76252_i0 PRJNA293022 76989 163 1.04386 1.7014918 Cochliopodium minus 313997 Discosea other_Eukaryota 200 4.589999999999999e-47   NTclustered gi|330902862|gb|JF298257.1| 313997 g76252 i0 89.157 37.1901840490798 166 11 98 4 3 161 172 7 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 6062 200 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
11851914 11851914 PRJNA293022_P_NODE_33730_length_241_cov_1.078125_g32993_i0 PRJNA293022 33730 241 1.078125 2.59828125 Dermamoeba algensis 242549 Discosea other_Eukaryota 442 1.0999999999999999e-119   NTclustered gi|33946341|gb|AY294148.1| 242549 g32993 i0 100 17.8423236514523 239 0 99 0 1 239 963 725 Dermamoeba algensis small subunit ribosomal RNA gene, partial sequence blastn 4300 442 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Dermamoeba Dermamoeba algensis
11851923 11851923 PRJNA293022_P_NODE_35930_length_233_cov_1.684783_g35193_i0 PRJNA293022 35930 233 1.684783 3.92554439 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 383 6.51e-102   NTclustered gi|33946346|gb|AY294152.1| 242541 g35193 i0 96.537 100.948497854077 231 8 99 0 1 231 663 433 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 23521 383 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
11851961 11851961 PRJNA293022_P_NODE_44170_length_210_cov_1.279503_g43433_i0 PRJNA293022 44170 210 1.279503 2.6869563 Vannella septentrionalis 197531 Discosea other_Eukaryota 359 9.7e-95   NTclustered gi|300078499|gb|GU001161.1| 197531 g43433 i0 97.63 49.3857142857143 211 2 99 1 1 208 2716 2506 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10371 359 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
13127304 13127304 PRJNA293022_P_NODE_8371_length_494_cov_5.128090_g7645_i0 PRJNA293022 8371 494 5.12809 25.3327646 Planopodium desertum 2773111 Discosea other_Eukaryota 898 0   NTclustered gi|330902849|gb|JF298243.1| 2773111 g7645 i0 99.593 43.2429149797571 492 2 99 0 1 492 498 7 Ovalopodium desertum clone 3701 18S ribosomal RNA gene, partial sequence blastn 21362 898 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Planopodium Planopodium desertum
13813185 13813185 PRJNA293022_P_NODE_80311_length_160_cov_3.522523_g79574_i0 PRJNA293022 80311 160 3.522523 5.6360368 Vannellidae 95227 Discosea other_Eukaryota 294 2e-75   NTclustered gi|62865947|gb|AY929922.1| 325065 g79574 i0 100 99.375 159 0 99 0 2 160 286 444 Platyamoeba sp. strain CAZ7/I 18S small subunit ribosomal RNA gene, partial sequence blastn 15900 294 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Platyamoeba Platyamoeba sp. strain CAZ7/I
15675929 15675929 PRJNA293022_P_NODE_19653_length_321_cov_3.191176_g18916_i0 PRJNA293022 19653 321 3.191176 10.24367496 Paramoeba aparasomata 2583407 Discosea other_Eukaryota 135 2.9100000000000003e-27   NTclustered gi|1767098935|gb|MK518072.1| 2583407 g18916 i0 75.625 0.996884735202492 320 52 93 18 21 319 14854 14540 Paramoeba aparasomata mitochondrion, complete genome blastn 320 135 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba aparasomata
16950587 16950587 PRJNA293022_P_NODE_19474_length_323_cov_1.963504_g18737_i0 PRJNA293022 19474 323 1.963504 6.34211792 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 204 7.909999999999999e-48   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g18737 i0 79.288 72.1207430340557 309 50 93 12 24 323 32207 32510 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 23295 204 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
16950625 16950625 PRJNA293022_P_NODE_30374_length_254_cov_6.292683_g29637_i0 PRJNA293022 30374 254 6.292683 15.98341482 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 363 9.379999999999998e-96   NTclustered gi|300078498|gb|GU001160.1| 5755 g29637 i0 92.337 1.02755905511811 261 11 100 8 1 254 5670 5928 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 261 363 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
17637290 17637290 PRJNA293022_P_NODE_18474_length_332_cov_2.049470_g17737_i0 PRJNA293022 18474 332 2.04947 6.8042404 Paramoeba 200890 Discosea other_Eukaryota 388 2.1e-103   NTclustered gi|145386792|gb|EF216917.1| 308475 g17737 i0 88.182 75.7771084337349 330 33 99 6 1 328 1481 1156 Paramoeba branchiphila strain SEDMH1 28S large subunit ribosomal RNA gene, partial sequence blastn 25158 388 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
20774650 20774650 PRJNA293022_P_NODE_18257_length_334_cov_2.035088_g17520_i0 PRJNA293022 18257 334 2.035088 6.79719392 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 385 2.73e-102   NTclustered gi|1079488025|ref|NC_031417.1| 180228 g17520 i0 87.611 86.2095808383233 339 33 99 5 3 333 33365 33702 Paramoeba pemaquidensis culture-collection CCAP:1560/4 mitochondrion, complete genome blastn 28794 385 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
22049724 22049724 PRJNA293022_P_NODE_40578_length_219_cov_1.741176_g39841_i0 PRJNA293022 40578 219 1.741176 3.81317544 uncultured Vannellidae 544561 Discosea other_Eukaryota 396 7.769999999999997e-106   NTclustered gi|270381377|emb|FN598227.1| 544561 g39841 i0 99.539 91.187214611872193 217 1 99 0 3 219 815 1031 Uncultured Vannellidae partial 18S rRNA gene, clone BIO1_A11 blastn 19970 396 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae   uncultured Vannellidae
23325533 23325533 PRJNA293022_P_NODE_8699_length_485_cov_10.055046_g7971_i0 PRJNA293022 8699 485 10.055046 48.7669731 Paramoeba perurans 437603 Discosea other_Eukaryota 329 1.95e-85   NTclustered gi|145386785|gb|EF216910.1| 437603 g7971 i0 80.674 42.8123711340206 445 68 90 15 16 452 1 435 Neoparamoeba perurans strain GD-HAC/2/1 28S large subunit ribosomal RNA gene, partial sequence blastn 20764 329 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
24599445 24599445 PRJNA293022_P_NODE_55460_length_187_cov_1.485507_g54723_i0 PRJNA293022 55460 187 1.485507 2.77789809 Mayorella sp. JJP-2003 242541 Discosea other_Eukaryota 265 1.89e-66   NTclustered gi|33946346|gb|AY294152.1| 242541 g54723 i0 92.432 89.4919786096257 185 14 99 0 1 185 221 37 Mayorella sp. JJP-2003 actin mRNA, partial cds blastn 16735 265 1 Eukaryota Amoebozoa   Discosea   Longamoebia   Mayorella Mayorella sp. JJP-2003
28134219 28134219 PRJNA293022_P_NODE_44225_length_210_cov_1.074534_g43488_i0 PRJNA293022 44225 210 1.074534 2.2565214 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 111 1.6e-26   NR XP_004332832.1 1257118 g43488 i0 75.4 2.95714285714286 69 17 98.6 0 207 1 373 441 XP_004332832.1 Prokumamolisin, putative [Acanthamoeba castellanii str. Neff] diamond 621 111 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28432253 28432253 PRJNA293022_P_NODE_37826_length_227_cov_1.713483_g37089_i0 PRJNA293022 37826 227 1.713483 3.88960641 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 73.6 2.55e-13   NR XP_004341732.1 1257118 g37089 i0 87.8 1.08370044052863 41 5 54.2 0 3 125 269 309 XP_004341732.1 uncharacterized protein ACA1_198710 [Acanthamoeba castellanii str. Neff] diamond 246 73.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28463932 28463932 PRJNA293022_P_NODE_72066_length_166_cov_0.888889_g71329_i0 PRJNA293022 72066 166 0.888889 1.47555574 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87.8 1.05e-20   NR XP_004358072.1 1257118 g71329 i0 74.1 3.90361445783133 54 14 97.6 0 164 3 25 78 XP_004358072.1 ribosomal protein L31e, putative [Acanthamoeba castellanii str. Neff] diamond 648 87.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29032364 29032364 PRJNA293022_P_NODE_75908_length_164_cov_0.904348_g75171_i0 PRJNA293022 75908 164 0.904348 1.48313072 Paramoeba pemaquidensis 180228 Discosea other_Eukaryota 99 6.819999999999999e-23   NR AEL74961.1 180228 g75171 i0 86.8 1.86585365853659 53 7 97 0 161 3 196 248 AEL74961.1 alpha-tubulin, partial [Paramoeba pemaquidensis] diamond 306 99 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba pemaquidensis
30218115 30218115 PRJNA293022_P_NODE_30772_length_253_cov_1.147059_g30035_i0 PRJNA293022 30772 253 1.147059 2.90205927 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 121 2.29e-33   NR XP_004333102.1 1257118 g30035 i0 71.4 1.99209486166008 84 24 99.6 0 253 2 48 131 XP_004333102.1 ribosomal protein L32, putative [Acanthamoeba castellanii str. Neff] diamond 504 121 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;