RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA290839", tax_phylum = "Verrucomicrobiota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA290839 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17637131 17637131 PRJNA290839_P_NODE_614_length_327_cov_1.228346_g593_i0 PRJNA290839 614 327 1.228346 4.01669142 Akkermansia 239934 Bacteria Bacteria 604 1.8799999999999993e-168   NTclustered gi|1888387165|gb|CP058562.1| 239935 g593 i0 100 295.94495412844 327 0 100 0 1 327 137302 137628 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 96774 604 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
17637132 17637132 PRJNA290839_P_NODE_954_length_259_cov_1.763441_g933_i0 PRJNA290839 954 259 1.763441 4.56731219 Akkermansia 239934 Bacteria Bacteria 473 4.25e-129   NTclustered gi|1888387165|gb|CP058562.1| 239935 g933 i0 99.614 296 259 1 100 0 1 259 138059 137801 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 76664 473 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
27548078 27548078 PRJNA290839_P_NODE_1224_length_249_cov_0.886364_g1203_i0 PRJNA290839 1224 249 0.886364 2.20704636 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 157 6.259999999999999e-45   NR RYD65414.1 2026800 g1203 i0 85.4 0.987951807228916 82 12 98.8 0 3 248 243 324 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 246 157 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29410889 29410889 PRJNA290839_P_NODE_1069_length_252_cov_0.865922_g1048_i0 PRJNA290839 1069 252 0.865922 2.18212344 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 113 8.44e-28   NR MDB6031664.1 2026801 g1048 i0 65.1 0.988095238095238 83 28 98.8 1 250 2 84 165 MDB6031664.1 nemA [Verrucomicrobiales bacterium] diamond 249 113 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;