RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA290839" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA290839 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10576828 10576828 PRJNA290839_P_NODE_1149_length_250_cov_0.881356_g1128_i0 PRJNA290839 1149 250 0.881356 2.20339 Myxococcales bacterium 2026763 Bacteria Bacteria 132 6.5099999999999995e-37   NR MBX2811719.1 2026763 g1128 i0 73.2 3.936 82 22 98.4 0 248 3 70 151 MBX2811719.1 superoxide dismutase [Fe] [Myxococcales bacterium] diamond 984 132 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
26996739 26996739 PRJNA290839_P_NODE_1602_length_242_cov_1.798817_g1581_i0 PRJNA290839 1602 242 1.798817 4.35313714 Pseudomonadati 3379134 Bacteria Bacteria 54.3 3.12e-7   NR WP_371876522.1 394095 g1581 i0 37.5 2.85123966942149 80 44 93 2 241 17 7 85 WP_371876522.1 RCC1 domain-containing protein, partial [Pyxidicoccus fallax] diamond 690 54.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Pyxidicoccus Pyxidicoccus fallax
29347920 29347920 PRJNA290839_P_NODE_1249_length_249_cov_0.875000_g1228_i0 PRJNA290839 1249 249 0.875 2.17875 Myxococcales bacterium 2026763 Bacteria Bacteria 57.4 9.19e-8   NR MCA9507754.1 2026763 g1228 i0 40.3 0.927710843373494 77 43 92.8 2 12 242 85 158 MCA9507754.1 hypothetical protein [Myxococcales bacterium] diamond 231 57.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
31559747 31559747 PRJNA290839_P_NODE_1316_length_247_cov_1.120690_g1295_i0 PRJNA290839 1316 247 1.12069 2.7681043 Corallococcus sp. 4LFB 3383249 Bacteria Bacteria 41.6 0.0203   NR MFP2900434.1 3383249 g1295 i0 50 0.923076923076923 38 19 46.2 0 191 78 35 72 MFP2900434.1 beta/gamma crystallin-related protein [Corallococcus sp. 4LFB] diamond 228 41.6 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus sp. 4LFB

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;