RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA290839", tax_phylum = "Discosea" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 10 ✖

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

bioproject 1

  • PRJNA290839 · 10 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8026201 8026201 PRJNA290839_P_NODE_427_length_395_cov_1.093168_g406_i0 PRJNA290839 427 395 1.093168 4.3180136 root 1 Root_unresolved Root_unresolved 213 2.77e-64   NR XP_004344078.1 1257118 g406 i0 78.6 9.80506329113924 131 28 99.5 0 1 393 190 320 XP_004344078.1 Sadenosyl-L-homocysteine hydrolase, putative [Acanthamoeba castellanii str. Neff] diamond 3873 214 0.995327102803738 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16950295 16950295 PRJNA290839_P_NODE_254_length_534_cov_1.648590_g233_i0 PRJNA290839 254 534 1.64859 8.8034706 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 269 4.43e-82   NR XP_004337289.1 1257118 g233 i0 81 21.0337078651685 168 32 94.4 0 505 2 4 171 XP_004337289.1 eukaryotic translation elongation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 11232 270 0.996296296296296 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27028564 27028564 PRJNA290839_P_NODE_242_length_548_cov_2.120000_g221_i0 PRJNA290839 242 548 2.12 11.6176 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 282 2.37e-93   NR XP_004341437.1 1257118 g221 i0 73.6 11.956204379562 182 48 99.6 0 548 3 3 184 XP_004341437.1 ribosomal proteins l2, RNA binding domain containing protein [Acanthamoeba castellanii str. Neff] diamond 6552 282 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27327109 27327109 PRJNA290839_P_NODE_1163_length_250_cov_0.881356_g1142_i0 PRJNA290839 1163 250 0.881356 2.20339 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 54.3 1.75e-6   NR XP_004339568.1 1257118 g1142 i0 38.2 0.816 68 36 81.6 1 11 214 131 192 XP_004339568.1 START domain containing protein [Acanthamoeba castellanii str. Neff] diamond 204 54.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27358835 27358835 PRJNA290839_P_NODE_1403_length_246_cov_0.895954_g1382_i0 PRJNA290839 1403 246 0.895954 2.20404684 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 110 2.33e-26   NR XP_004333651.1 1257118 g1382 i0 63.8 0.975609756097561 80 29 97.6 0 6 245 44 123 XP_004333651.1 coronin3, putative [Acanthamoeba castellanii str. Neff] diamond 240 110 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28179365 28179365 PRJNA290839_P_NODE_1226_length_249_cov_0.880682_g1205_i0 PRJNA290839 1226 249 0.880682 2.19289818 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 45.1 0.00626   NR XP_004339445.1 1257118 g1205 i0 46.8 0.566265060240964 47 25 56.6 0 249 109 8 54 XP_004339445.1 uncharacterized protein ACA1_061730 [Acanthamoeba castellanii str. Neff] diamond 141 45.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29284508 29284508 PRJNA290839_P_NODE_409_length_403_cov_2.333333_g388_i0 PRJNA290839 409 403 2.333333 9.40333199 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 161 1.4299999999999999e-47   NR XP_004334896.1 1257118 g388 i0 61.8 0.975186104218362 131 48 96.8 2 13 402 1 130 XP_004334896.1 ribosomal protein L6, putative [Acanthamoeba castellanii str. Neff] diamond 393 161 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29631721 29631721 PRJNA290839_P_NODE_490_length_368_cov_1.054237_g469_i0 PRJNA290839 490 368 1.054237 3.87959216 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 94 6.21e-20   NR AFD36233.1 5755 g469 i0 60.3 0.635869565217391 78 31 63.6 0 234 1 61 138 AFD36233.1 protein kinase C4, partial [Acanthamoeba castellanii] diamond 234 94 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30295781 30295781 PRJNA290839_P_NODE_812_length_285_cov_1.160377_g791_i0 PRJNA290839 812 285 1.160377 3.30707445 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 124 6.149999999999999e-31   NR XP_004348339.1 1257118 g791 i0 69.6 1.78947368421053 92 27 95.8 1 12 284 1 92 XP_004348339.1 H(+)-transporting atpase family protein [Acanthamoeba castellanii str. Neff] diamond 510 124 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31749195 31749195 PRJNA290839_P_NODE_697_length_307_cov_0.991453_g676_i0 PRJNA290839 697 307 0.991453 3.04376071 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 134 3.94e-34   NR XP_004335836.1 1257118 g676 i0 55.7 1.03583061889251 106 41 99.7 2 307 2 46 149 XP_004335836.1 uncharacterized protein ACA1_076760 [Acanthamoeba castellanii str. Neff] diamond 318 134 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;