RNAquarium Metadata Server
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contig_metadata

9 rows where bioproject = "PRJNA290839" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA290839 · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11851577 11851577 PRJNA290839_P_NODE_1650_length_242_cov_0.911243_g1629_i0 PRJNA290839 1650 242 0.911243 2.20520806 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 131 4.5e-35   NR NP_001025589.1 8364 g1629 i0 86.1 65.3181818181818 79 11 97.9 0 1 237 57 135 NP_001025589.1 succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial [Xenopus tropicalis] diamond 15807 132 0.992424242424242 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus tropicalis
15087093 15087093 PRJNA290839_P_NODE_1332_length_247_cov_0.896552_g1311_i0 PRJNA290839 1332 247 0.896552 2.21448344 Elephantidae 9780 Chordata Chordata 241 4.44e-59   NTclustered gi|2710901988|ref|XM_064293858.1| 9785 g1311 i0 84.874 46.1336032388664 238 36 96 0 2 239 155 392 PREDICTED: Loxodonta africana calmodulin 3 (CALM3), mRNA blastn 11395 241 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Proboscidea Elephantidae Loxodonta Loxodonta africana
23324954 23324954 PRJNA290839_P_NODE_1479_length_245_cov_0.901163_g1458_i0 PRJNA290839 1479 245 0.901163 2.20784935 Mus musculus 10090 Chordata Chordata 453 5.1900000000000006e-123   NTclustered gi|18606171|gb|BC022986.1| 10090 g1458 i0 100 66.9755102040816 245 0 100 0 1 245 2 246 Mus musculus transferrin, mRNA (cDNA clone MGC:29918 IMAGE:5123741), complete cds blastn 16409 453 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
26757533 26757533 PRJNA290839_P_NODE_1361_length_247_cov_0.885057_g1340_i0 PRJNA290839 1361 247 0.885057 2.18609079 Geotrypetes seraphini 260995 Chordata Chordata 110 4.3e-26   NR XP_033798422.1 260995 g1340 i0 65.9 0.995951417004049 82 28 99.6 0 2 247 1112 1193 XP_033798422.1 multidrug resistance-associated protein 1-like isoform X2 [Geotrypetes seraphini] diamond 246 110 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Gymnophiona Dermophiidae Geotrypetes Geotrypetes seraphini
28337505 28337505 PRJNA290839_P_NODE_1106_length_251_cov_0.876404_g1085_i0 PRJNA290839 1106 251 0.876404 2.19977404 Dromiciops gliroides 33562 Chordata Chordata 64.3 2.14e-10   NR XP_043826057.1 33562 g1085 i0 54.8 3.50199203187251 73 33 87.3 0 15 233 111 183 XP_043826057.1 60S ribosomal protein L17-like [Dromiciops gliroides] diamond 879 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Microbiotheria Microbiotheriidae Dromiciops Dromiciops gliroides
30136988 30136988 PRJNA290839_P_NODE_1232_length_249_cov_0.880682_g1211_i0 PRJNA290839 1232 249 0.880682 2.19289818 Hypanus sabinus 79690 Chordata Chordata 61.2 1.2e-8   NR XP_059823631.1 79690 g1211 i0 46 0.602409638554217 50 27 60.2 0 80 229 558 607 XP_059823631.1 IQ calmodulin-binding motif-containing protein 1 isoform X1 [Hypanus sabinus] diamond 150 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
30359047 30359047 PRJNA290839_P_NODE_1132_length_251_cov_0.865169_g1111_i0 PRJNA290839 1132 251 0.865169 2.17157419 Oryctolagus cuniculus 9986 Chordata Chordata 64.3 1.01e-9   NR XP_002720903.2 9986 g1111 i0 42.5 0.956175298804781 80 40 88.4 1 222 1 192 271 XP_002720903.2 uncharacterized protein [Oryctolagus cuniculus] diamond 240 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Lagomorpha Leporidae Oryctolagus Oryctolagus cuniculus
31450780 31450780 PRJNA290839_P_NODE_1536_length_243_cov_1.082353_g1515_i0 PRJNA290839 1536 243 1.082353 2.63011779 Xenopus 8353 Chordata Chordata 75.9 5.06e-15   NR NP_001084009.1 8355 g1515 i0 57.4 43.4074074074074 68 29 84 0 206 3 32 99 NP_001084009.1 myosin light chain 11 [Xenopus laevis] diamond 10548 76.6 0.990861618798956 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32255947 32255947 PRJNA290839_P_NODE_1098_length_251_cov_0.876404_g1077_i0 PRJNA290839 1098 251 0.876404 2.19977404 Protopterus annectens 7888 Chordata Chordata 73.2 8.07e-13   NR XP_043929618.1 7888 g1077 i0 48.8 2.77290836653386 80 37 95.6 1 246 7 887 962 XP_043929618.1 protein mono-ADP-ribosyltransferase PARP14-like [Protopterus annectens] diamond 696 73.2 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;