RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA290839" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA290839 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4887437 4887437 PRJNA290839_P_NODE_1604_length_242_cov_1.378698_g1583_i0 PRJNA290839 1604 242 1.378698 3.33644916 Campylobacter 194 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|1207769205|gb|MF351718.1| 199 g1583 i0 100 221.264462809917 242 0 100 0 1 242 1624 1865 Campylobacter concisus strain H11O-S1 23S ribosomal RNA gene, partial sequence blastn 53546 448 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
4887440 4887440 PRJNA290839_P_NODE_644_length_319_cov_2.345528_g623_i0 PRJNA290839 644 319 2.345528 7.48223432 Campylobacter 194 Bacteria Bacteria 584 2.38e-162   NTclustered gi|1207769198|gb|MF351711.1| 199 g623 i0 99.687 250.639498432602 319 1 100 0 1 319 18 336 Campylobacter concisus strain P19CDO-S1 23S ribosomal RNA gene, partial sequence blastn 79954 584 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
20774375 20774375 PRJNA290839_P_NODE_177_length_667_cov_1.074074_g156_i0 PRJNA290839 177 667 1.074074 7.16407358 Campylobacter showae 204 Bacteria Bacteria 1219 0   NTclustered gi|1483583529|emb|LT631453.1| 204 g156 i0 99.7 237.376311844078 666 2 99 0 1 666 390165 389500 Campylobacter showae strain B91_SCBr genome assembly, chromosome: I blastn 158330 1219 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter showae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;