RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA290839" and tax_phylum = "Apicomplexa"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA290839 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
372904 372904 PRJNA290839_P_NODE_1501_length_244_cov_0.912281_g1480_i0 PRJNA290839 1501 244 0.912281 2.22596564 Plasmodium vivax 5855 SAR_Eukaryotes SAR_Eukaryotes 130 9.88e-26   NTclustered gi|156098780|ref|XM_001615356.1| 5855 g1480 i0 87.5 1.68032786885246 112 14 46 0 2 113 945 834 Plasmodium vivax spermidine synthase, putative (PVX_092065), mRNA blastn 410 130 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium vivax
10576833 10576833 PRJNA290839_P_NODE_329_length_469_cov_1.659091_g308_i0 PRJNA290839 329 469 1.659091 7.78113679 Plasmodium sp. gorilla clade G2 880535 SAR_Eukaryotes SAR_Eukaryotes 56.5 0.004   NTclustered gi|1620167712|ref|XM_028681606.1| 880535 g308 i0 94.595 0.0788912579957356 37 1 8 1 27 62 14964 15000 Plasmodium sp. gorilla clade G2 E3 ubiquitin-protein ligase, putative (PADL01_0825300), partial mRNA blastn 37 56.5 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium sp. gorilla clade G2
28842511 28842511 PRJNA290839_P_NODE_1408_length_246_cov_0.895954_g1387_i0 PRJNA290839 1408 246 0.895954 2.20404684 Cardiosporidium cionae 476202 SAR_Eukaryotes SAR_Eukaryotes 65.9 2.88e-10   NR KAF8822289.1 476202 g1387 i0 53.6 2.02439024390244 56 26 68.3 0 171 4 548 603 KAF8822289.1 putative Ornithine decarboxylase [Cardiosporidium cionae] diamond 498 65.9 1 Eukaryota Sar   Apicomplexa Aconoidasida Nephromycida   Cardiosporidium Cardiosporidium cionae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;