RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA290839" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA290839 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13812869 13812869 PRJNA290839_P_NODE_1631_length_242_cov_0.917160_g1610_i0 PRJNA290839 1631 242 0.91716 2.2195272 root 1 Root_unresolved Root_unresolved 448 2.3799999999999995e-121   NTclustered gi|1073549716|gb|KX946495.1| 47478 g1610 i0 100 99.1363636363636 242 0 100 0 1 242 307 66 Deinococcus sp. strain FX4 16S ribosomal RNA gene, partial sequence blastn 23991 448 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp.
19498818 19498818 PRJNA290839_P_NODE_416_length_402_cov_0.942249_g395_i0 PRJNA290839 416 402 0.942249 3.78784098 Fretibacterium fastidiosum 651822 Bacteria Bacteria 512 1.4699999999999998e-140   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g395 i0 90.657 318.373134328358 396 22 98 7 8 401 68532 68150 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 127986 512 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
24011396 24011396 PRJNA290839_P_NODE_1419_length_246_cov_0.890173_g1398_i0 PRJNA290839 1419 246 0.890173 2.18982558 Deinococcus 1298 Bacteria Bacteria 252 2.04e-62   NTclustered gi|470478007|ref|NR_076423.1| 68909 g1398 i0 86.638 199.422764227642 232 25 93 6 1 228 53 282 Deinococcus geothermalis plasmid pDGEO01 strain AG-3a 23S ribosomal RNA gene, complete sequence blastn 49058 252 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus geothermalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;