RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA290839", tax_kingdom = "Pseudomonadati" and tax_phylum = "Spirochaetota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Spirochaetota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA290839 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22736332 22736332 PRJNA290839_P_NODE_278_length_504_cov_7.682135_g257_i0 PRJNA290839 278 504 7.682135 38.7179604 Treponema 157 Bacteria Bacteria 876 0   NTclustered gi|1807378492|gb|CP048020.1| 69710 g257 i0 98.02 195.583333333333 505 8 100 2 1 504 2079875 2079372 Treponema vincentii strain OMZ 804 chromosome, complete genome blastn 98574 881 0.994324631101022 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema vincentii
28432246 28432246 PRJNA290839_P_NODE_1466_length_245_cov_0.906977_g1445_i0 PRJNA290839 1466 245 0.906977 2.22209365 Treponema sp. OMZ 857 1643513 Bacteria Bacteria 145 2.629999999999999e-38   NR WP_253727630.1 1643513 g1445 i0 90.1 1.98367346938776 81 8 99.2 0 2 244 198 278 WP_253727630.1 chemotaxis protein CheA [Treponema sp. OMZ 857] diamond 486 145 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia Spirochaetales Treponemataceae Treponema Treponema sp. OMZ 857

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;