RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA290839", tax_kingdom = "Pseudomonadati" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA290839 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26979219 26979219 PRJNA290839_P_NODE_1362_length_247_cov_0.885057_g1341_i0 PRJNA290839 1362 247 0.885057 2.18609079 Thermoanaerobaculia bacterium 2651171 Bacteria Bacteria 112 3.8299999999999997e-28   NR HUP48818.1 2651171 g1341 i0 58.5 2.89068825910931 82 34 99.6 0 246 1 43 124 HUP48818.1 phytanoyl-CoA dioxygenase family protein [Thermoanaerobaculia bacterium] diamond 714 112 1 Bacteria   Pseudomonadati Acidobacteriota Thermoanaerobaculia       Thermoanaerobaculia bacterium
28684985 28684985 PRJNA290839_P_NODE_527_length_354_cov_2.181495_g506_i0 PRJNA290839 527 354 2.181495 7.7224923 Acidobacteriota bacterium 1978231 Bacteria Bacteria 44.7 0.0133   NR MCB1025449.1 1978231 g506 i0 52.6 0.322033898305085 38 18 32.2 0 345 232 19 56 MCB1025449.1 hypothetical protein [Acidobacteriota bacterium] diamond 114 44.7 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
29680874 29680874 PRJNA290839_P_NODE_850_length_279_cov_1.131068_g829_i0 PRJNA290839 850 279 1.131068 3.15567972 Bacteria 2 Bacteria Bacteria 60.1 2.05e-9   NR MDP9263864.1 1978231 g829 i0 47.7 3.58064516129032 65 31 68.8 2 195 4 14 76 MDP9263864.1 hypothetical protein [Acidobacteriota bacterium] diamond 999 60.1 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;