RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA290839" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA290839 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8712183 8712183 PRJNA290839_P_NODE_987_length_256_cov_1.267760_g966_i0 PRJNA290839 987 256 1.26776 3.2454656 Fusobacterium 848 Bacteria Bacteria 473 4.189999999999999e-129   NTclustered gi|2704983719|gb|CP077132.1| 851 g966 i0 100 490.0234375 256 0 100 0 1 256 92398 92653 Fusobacterium nucleatum strain KCOM3208 chromosome, complete genome blastn 125446 473 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
11851581 11851581 PRJNA290839_P_NODE_910_length_268_cov_1.256410_g889_i0 PRJNA290839 910 268 1.25641 3.3671788 Fusobacterium vincentii 155615 Bacteria Bacteria 54.7 0.007   NTclustered gi|583841496|gb|CP007064.1| 469602 g889 i0 94.444 0.134328358208955 36 0 13 2 130 165 577728 577761 Fusobacterium nucleatum subsp. vincentii 3_1_27 chromosome 1, complete sequence blastn 36 54.7 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium vincentii
12537996 12537996 PRJNA290839_P_NODE_650_length_318_cov_1.061224_g629_i0 PRJNA290839 650 318 1.061224 3.37469232 root 1 Root_unresolved Root_unresolved 582 8.549999999999998e-162   NTclustered gi|51241577|emb|AJ810271.1| 860 g629 i0 99.686 247.981132075472 318 1 100 0 1 318 329 12 Fusobacterium periodonticum partial 16S rRNA gene, strain KP-F10 blastn 78858 582 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium periodonticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;