RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA290839" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 4 ✖

bioproject 1

  • PRJNA290839 · 4 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
14401865 14401865 PRJNA290839_P_NODE_1472_length_245_cov_0.901163_g1451_i0 PRJNA290839 1472 245 0.901163 2.20784935 Auxenochlorella protothecoides 3075 Plants Plants 122 5e-30   NR RMZ53593.1 3075 g1451 i0 86.4 10.5551020408163 66 9 80.8 0 205 8 179 244 RMZ53593.1 hypothetical protein APUTEX25_003415, partial [Auxenochlorella protothecoides] diamond 2586 122 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
27010807 27010807 PRJNA290839_P_NODE_1382_length_246_cov_0.901734_g1361_i0 PRJNA290839 1382 246 0.901734 2.21826564 Trebouxia sp. C 2796353 Plants Plants 55.1 1.75e-6   NR KAL0028557.1 2905654 g1361 i0 42.2 0.780487804878049 64 37 78 0 203 12 10 73 KAL0028557.1 hypothetical protein WJX79_001690 [Trebouxia sp. C0005] diamond 192 55.1 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0005
30091610 30091610 PRJNA290839_P_NODE_412_length_403_cov_1.118182_g391_i0 PRJNA290839 412 403 1.118182 4.50627346 Eukaryota 2759 Plants Plants 113 5.44e-29   NR GFR49314.1 47775 g391 i0 63.5 3.76674937965261 96 35 71.5 0 373 86 49 144 GFR49314.1 hypothetical protein Agub_g11337, partial [Astrephomene gubernaculifera] diamond 1518 114 0.991228070175439 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Astrephomenaceae Astrephomene Astrephomene gubernaculifera
30723652 30723652 PRJNA290839_P_NODE_794_length_288_cov_1.330233_g773_i0 PRJNA290839 794 288 1.330233 3.83107104 Coccomyxa 41891 Plants Plants 151 1.25e-44   NR CAK0734215.1 1274662 g773 i0 77.9 7.91666666666667 95 21 99 0 3 287 27 121 CAK0734215.1 60S ribosomal protein L23A [Coccomyxa viridis] diamond 2280 152 0.993421052631579 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;