RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA290839", tax_clade = "Discoba" and tax_phylum = "Heterolobosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

  • Discoba · 2 ✖

bioproject 1

  • PRJNA290839 · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2923582 2923582 PRJNA290839_P_NODE_1063_length_252_cov_0.865922_g1042_i0 PRJNA290839 1063 252 0.865922 2.18212344 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 289 1.6e-73   NTclustered gi|290999037|ref|XM_002682041.1| 5762 g1042 i0 87.302 1 252 32 100 0 1 252 4 255 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_30199), partial mRNA blastn 252 289 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
31450781 31450781 PRJNA290839_P_NODE_896_length_270_cov_1.507614_g875_i0 PRJNA290839 896 270 1.507614 4.0705578 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 81.3 2e-16   NR XP_044546422.1 51637 g875 i0 54.5 5.05555555555556 77 31 85.6 1 39 269 83 155 XP_044546422.1 uncharacterized protein C9374_007798 [Naegleria lovaniensis] diamond 1365 81.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;