RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA290839" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 7 ✖

bioproject 1

  • PRJNA290839 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2923582 2923582 PRJNA290839_P_NODE_1063_length_252_cov_0.865922_g1042_i0 PRJNA290839 1063 252 0.865922 2.18212344 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 289 1.6e-73   NTclustered gi|290999037|ref|XM_002682041.1| 5762 g1042 i0 87.302 1 252 32 100 0 1 252 4 255 Naegleria gruberi uncharacterized protein (NAEGRDRAFT_30199), partial mRNA blastn 252 289 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
8026194 8026194 PRJNA290839_P_NODE_1487_length_245_cov_0.895349_g1466_i0 PRJNA290839 1487 245 0.895349 2.19360505 Gyropaigne lefevrei 86637 Euglenozoa other_Eukaryota 305 1.54e-78   NTclustered gi|21239048|gb|AF263946.1| 86637 g1466 i0 91.441 13.3387755102041 222 19 91 0 21 242 302 81 Gyropaigne lefevrei paraxonemal rod protein PAR 1 mRNA, partial cds blastn 3268 305 1 Eukaryota Discoba   Euglenozoa Euglenida Rhabdomonadales Astasiidae Gyropaigne Gyropaigne lefevrei
8026197 8026197 PRJNA290839_P_NODE_1567_length_243_cov_0.911765_g1546_i0 PRJNA290839 1567 243 0.911765 2.21558895 Leishmania martiniquensis 1580590 Euglenozoa other_Eukaryota 207 4.42e-49   NTclustered gi|2787686800|ref|XM_067319977.1| 1580590 g1546 i0 82.553 5.47325102880658 235 41 97 0 9 243 1526 1292 Leishmania martiniquensis uncharacterized protein (LSCM1_02394), partial mRNA blastn 1330 207 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania martiniquensis
27091848 27091848 PRJNA290839_P_NODE_1422_length_246_cov_0.890173_g1401_i0 PRJNA290839 1422 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 63.2 2.46e-9   NR KAJ9448377.1 91374 g1401 i0 41.9 4.3780487804878 74 42 90.2 1 244 23 234 306 KAJ9448377.1 hypothetical protein DIPPA_55829 [Diplonema papillatum] diamond 1077 63.5 0.995275590551181 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
28148172 28148172 PRJNA290839_P_NODE_1085_length_251_cov_1.634831_g1064_i0 PRJNA290839 1085 251 1.634831 4.10342581 Bodo saltans 75058 Euglenozoa other_Eukaryota 79 7.27e-15   NR CUG91655.1 75058 g1064 i0 48.8 1.91235059760956 80 37 90.8 1 18 245 154 233 CUG91655.1 Hypothetical protein, putative [Bodo saltans] diamond 480 79 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28400638 28400638 PRJNA290839_P_NODE_1446_length_245_cov_0.906977_g1425_i0 PRJNA290839 1446 245 0.906977 2.22209365 Trypanosoma brucei gambiense DAL972 679716 Euglenozoa other_Eukaryota 135 1.32e-37   NR XP_011774275.1 679716 g1425 i0 80.2 4.95918367346939 81 16 99.2 0 244 2 105 185 XP_011774275.1 S-adenosylmethionine synthetase, putative,(fragment), partial [Trypanosoma brucei gambiense DAL972] diamond 1215 135 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma brucei
31450781 31450781 PRJNA290839_P_NODE_896_length_270_cov_1.507614_g875_i0 PRJNA290839 896 270 1.507614 4.0705578 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 81.3 2e-16   NR XP_044546422.1 51637 g875 i0 54.5 5.05555555555556 77 31 85.6 1 39 269 83 155 XP_044546422.1 uncharacterized protein C9374_007798 [Naegleria lovaniensis] diamond 1365 81.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;