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contig_metadata

11 rows where bioproject = "PRJNA289590" and tax_phylum = "Chordata"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chordata · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA289590 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1647432 1647432 PRJNA289590_P_NODE_29942_length_164_cov_0.904348_g29718_i0 PRJNA289590 29942 164 0.904348 1.48313072 Canis lupus 9612 Chordata Chordata 298 1.59e-76   NTclustered gi|118601107|gb|AC187010.10| 9615 g29718 i0 100 134.591463414634 161 0 98 0 1 161 14896 15056 Canis Familiaris chromosome 11, clone XX-159O9, complete sequence blastn 22073 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
4199846 4199846 PRJNA289590_P_NODE_31284_length_162_cov_0.920354_g31060_i0 PRJNA289590 31284 162 0.920354 1.49097348 Meleagris gallopavo 9103 Chordata Chordata 219 1.26e-52   NTclustered gi|1776485102|ref|XM_010729051.3| 9103 g31060 i0 91.358 4 162 10 100 2 1 162 545 702 PREDICTED: Meleagris gallopavo zinc finger MYM-type containing 5 (ZMYM5), transcript variant X4, mRNA blastn 648 219 1 Eukaryota Opisthokonta Metazoa Chordata Aves Galliformes Phasianidae Meleagris Meleagris gallopavo
9300586 9300586 PRJNA289590_P_NODE_21288_length_192_cov_1.349650_g21064_i0 PRJNA289590 21288 192 1.34965 2.591328 Bos indicus 9915 Chordata Chordata 298 1.92e-76   NTclustered gi|2878527438|ref|XM_070789484.1| 9915 g21064 i0 98.802 1155.61458333333 167 2 87 0 1 167 1408 1574 PREDICTED: Bos indicus RNA binding motif single stranded interacting protein 2 (RBMS2), transcript variant X18, mRNA blastn 221878 298 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos indicus
15675357 15675357 PRJNA289590_P_NODE_26273_length_169_cov_0.866667_g26049_i0 PRJNA289590 26273 169 0.866667 1.46466723 Sus scrofa 9823 Chordata Chordata 303 3.53e-78   NTclustered gi|165931784|emb|AM932511.1| 9823 g26049 i0 99.401 24.6863905325444 167 1 99 0 3 169 308 142 Sus scrofa centromeric satellite repeat, clone Pg11 blastn 4172 303 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Suidae Sus Sus scrofa
22049139 22049139 PRJNA289590_P_NODE_31458_length_162_cov_0.911504_g31234_i0 PRJNA289590 31458 162 0.911504 1.47663648 Canis lupus 9612 Chordata Chordata 217 4.5199999999999996e-52   NTclustered gi|124378290|gb|AC189803.8| 9615 g31234 i0 90.798 3.3641975308642 163 14 100 1 1 162 187363 187201 Canis Familiaris chromosome 16, clone XX-374K10, complete sequence blastn 545 217 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Canidae Canis Canis lupus
26807018 26807018 PRJNA289590_P_NODE_14721_length_235_cov_3.053763_g14497_i0 PRJNA289590 14721 235 3.053763 7.17634305 Mammalia 40674 Chordata Chordata 98.6 4.279999999999999e-23   NR XP_058990340.1 9666 g14497 i0 63.6 34.3914893617021 77 26 95.7 1 10 234 119 195 XP_058990340.1 large ribosomal subunit protein eL22-like [Mustela lutreola] diamond 8082 99.4 0.991951710261569 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Mustelidae Mustela Mustela lutreola
27611382 27611382 PRJNA289590_P_NODE_22144_length_188_cov_0.820144_g21920_i0 PRJNA289590 22144 188 0.820144 1.54187072 Bufotes viridis 30338 Chordata Chordata 46.2 0.00106   NR CAK8609802.1 30338 g21920 i0 55.9 1.6595744680851101 34 15 54.3 0 80 181 1 34 CAK8609802.1 Lamina-associated polypeptide 2, isoform alpha [Bufotes viridis] diamond 312 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Bufonidae Bufotes Bufotes viridis
28905575 28905575 PRJNA289590_P_NODE_22148_length_187_cov_7.166667_g21924_i0 PRJNA289590 22148 187 7.166667 13.40166729 Lonchura striata 40157 Chordata Chordata 41.6 0.0473   NR XP_031362561.1 40157 g21924 i0 44.2 0.689839572192513 43 24 69 0 163 35 78 120 XP_031362561.1 LOW QUALITY PROTEIN: lysine-specific demethylase hairless [Lonchura striata] diamond 129 41.6 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Estrildidae Lonchura Lonchura striata
29000867 29000867 PRJNA289590_P_NODE_15308_length_231_cov_0.857143_g15084_i0 PRJNA289590 15308 231 0.857143 1.98000033 Staurois parvus 386267 Chordata Chordata 60.1 4.84e-10   NR CAI9620946.1 386267 g15084 i0 70.3 0.480519480519481 37 11 48.1 0 21 131 23 59 CAI9620946.1 unnamed protein product [Staurois parvus] diamond 111 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
31022056 31022056 PRJNA289590_P_NODE_14735_length_235_cov_2.010753_g14511_i0 PRJNA289590 14735 235 2.010753 4.72526955 Zosterops borbonicus 364589 Chordata Chordata 44.3 0.00425   NR TRZ17703.1 364589 g14511 i0 34.4 0.778723404255319 61 37 74 1 211 38 32 92 TRZ17703.1 hypothetical protein HGM15179_009421 [Zosterops borbonicus] diamond 183 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Aves Passeriformes Zosteropidae Zosterops Zosterops borbonicus
31179662 31179662 PRJNA289590_P_NODE_12335_length_260_cov_2.194313_g12111_i0 PRJNA289590 12335 260 2.194313 5.7052138 Erpetoichthys calabaricus 27687 Chordata Chordata 124 3.1599999999999997e-32   NR XP_051791274.1 27687 g12111 i0 77.4 7.76538461538462 84 18 95.8 1 4 252 121 204 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2019 124 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;