RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA289590" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28905586 28905586 PRJNA289590_P_NODE_3788_length_531_cov_2.730290_g3570_i0 PRJNA289590 3788 531 2.73029 14.4978399 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 204 1.85e-64   NR OGQ60213.1 1797882 g3570 i0 76.1 0.757062146892655 134 32 75.7 0 403 2 1 134 OGQ60213.1 MAG: hypothetical protein A3J24_09870 [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 402 204 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8
29000887 29000887 PRJNA289590_P_NODE_888_length_1609_cov_7.888462_g758_i0 PRJNA289590 888 1609 7.888462 126.92535358 Deltaproteobacteria bacterium RIFCSPLOWO2_ 2026735 Bacteria Bacteria 355 1.47e-117   NR OGQ60211.1 1797882 g758 i0 88.1 0.374766935985084 201 24 37.5 0 1207 605 1 201 OGQ60211.1 MAG: neutral zinc metallopeptidase [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 603 355 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8
29554717 29554717 PRJNA289590_P_NODE_4430_length_482_cov_2.034642_g4210_i0 PRJNA289590 4430 482 2.034642 9.80697444 Pseudomonadota 1224 Bacteria Bacteria 184 6.38e-57   NR OGQ60306.1 1797882 g4210 i0 78.2 1.41286307053942 119 26 74.1 0 481 125 20 138 OGQ60306.1 MAG: transcriptional regulator [Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8] diamond 681 184 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;