RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA289590", tax_clade = "Sar" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1059460 1059460 PRJNA289590_P_NODE_30021_length_164_cov_0.895652_g29797_i0 PRJNA289590 30021 164 0.895652 1.46886928 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 276 7.46e-70   NTclustered gi|375305427|gb|JF975387.1| 1143721 g29797 i0 97.516 10.7378048780488 161 4 98 0 1 161 1675 1835 Plagiopyla sp. QZ-2012 28S ribosomal RNA gene, partial sequence blastn 1761 276 1 Eukaryota Sar   Ciliophora Plagiopylea Plagiopylida Plagiopylidae Plagiopyla Plagiopyla sp. QZ-2012
4887322 4887322 PRJNA289590_P_NODE_13904_length_244_cov_1.066667_g13680_i0 PRJNA289590 13904 244 1.066667 2.60266748 Ciliophora 5878 SAR_Eukaryotes SAR_Eukaryotes 252 2.02e-62   NTclustered gi|10792|emb|X12768.1| 5908 g13680 i0 85.246 97.2540983606557 244 36 100 0 1 244 165 408 Tetrahymena pyriformis beta-tubulin gene 1 (beta-TT1) blastn 23730 252 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena pyriformis
16949847 16949847 PRJNA289590_P_NODE_19494_length_202_cov_1.359477_g19270_i0 PRJNA289590 19494 202 1.359477 2.74614354 Chilodonella hexasticha 1938391 SAR_Eukaryotes SAR_Eukaryotes 289 1.23e-73   NTclustered gi|1389430805|gb|MH341633.1| 1938391 g19270 i0 92.537 3.17326732673267 201 15 99 0 1 201 1922 2122 Chilodonella hexasticha strain C.hexasticha AS large subunit ribosomal RNA gene, partial sequence blastn 641 289 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella hexasticha

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;