RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA289590", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 6 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 6 ✖

bioproject 1

  • PRJNA289590 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5475934 5475934 PRJNA289590_P_NODE_20505_length_196_cov_2.068027_g20281_i0 PRJNA289590 20505 196 2.068027 4.05333292 Oceaniferula spumae 2979115 Bacteria Bacteria 132 2.12e-26   NTclustered gi|2753272999|dbj|AP026866.1| 2979115 g20281 i0 91.579 48.0204081632653 95 8 48 0 1 95 833029 833123 Verrucomicrobiaceae bacterium NT6N DNA, complete genome blastn 9412 132 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Oceaniferula Oceaniferula spumae
5476120 5476120 PRJNA289590_P_NODE_29125_length_165_cov_0.896552_g28901_i0 PRJNA289590 29125 165 0.896552 1.4793108 Opitutales bacterium 2026772 Bacteria Bacteria 150 4.76e-32   NTclustered gi|2814788334|emb|OY762281.2| 2026772 g28901 i0 83.333 10.133333333333301 168 22 100 6 1 165 977513 977677 MAG: Opitutales bacterium isolate 685e4509-010e-4797-9872-a51ee4494a19 genome assembly, chromosome: 1 blastn 1672 150 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium
18224466 18224466 PRJNA289590_P_NODE_6715_length_370_cov_2.246106_g6491_i0 PRJNA289590 6715 370 2.246106 8.3105922 Chthoniobacteraceae bacterium 2811408 Bacteria Bacteria 169 3.3499999999999996e-37   NTclustered gi|2813917447|gb|CP170506.1| 2811408 g6491 i0 90.625 61.7540540540541 128 10 34 2 245 370 3047506 3047379 MAG: Chthoniobacteraceae bacterium isolate SH-KS-3 chromosome, complete genome blastn 22849 169 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales Chthoniobacteraceae   Chthoniobacteraceae bacterium
26915958 26915958 PRJNA289590_P_NODE_22622_length_185_cov_1.529412_g22398_i0 PRJNA289590 22622 185 1.529412 2.8294122 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 70.5 2.82e-12   NR RYD85970.1 2026800 g22398 i0 53.8 0.843243243243243 52 24 84.3 0 30 185 515 566 RYD85970.1 MAG: hypothetical protein EOP84_00610 [Verrucomicrobiaceae bacterium] diamond 156 70.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
27358827 27358827 PRJNA289590_P_NODE_4183_length_499_cov_2.033333_g3964_i0 PRJNA289590 4183 499 2.033333 10.14633167 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 139 2.4899999999999996e-37   NR HEV2695716.1 2499141 g3964 i0 49.7 0.907815631262525 151 72 90.2 3 493 44 7 154 HEV2695716.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 453 139 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
29902356 29902356 PRJNA289590_P_NODE_24871_length_174_cov_1.112000_g24647_i0 PRJNA289590 24871 174 1.112 1.93488 PVC group 1783257 Bacteria Bacteria 52 8.33e-6   NR MEI6675535.1 2026799 g24647 i0 50.9 5 53 26 91.4 0 1 159 2541 2593 MEI6675535.1 cadherin-like beta sandwich domain-containing protein [Verrucomicrobiota bacterium] diamond 870 52 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;