RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA289590", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29600166 29600166 PRJNA289590_P_NODE_14190_length_241_cov_1.083333_g13966_i0 PRJNA289590 14190 241 1.083333 2.61083253 Longimicrobium sp. 2029185 Bacteria Bacteria 76.6 1.12e-14   NR HEY0154696.1 2029185 g13966 i0 50 2.31535269709544 72 35 89.6 1 12 227 105 175 HEY0154696.1 hypothetical protein [Longimicrobium sp.] diamond 558 76.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
31496486 31496486 PRJNA289590_P_NODE_26676_length_168_cov_0.873950_g26452_i0 PRJNA289590 26676 168 0.87395 1.468236 Gemmatimonadaceae bacterium 2026741 Bacteria Bacteria 47.8 2.44e-5   NR HEX3160337.1 2026741 g26452 i0 53.8 0.696428571428571 39 18 69.6 0 23 139 36 74 HEX3160337.1 hypothetical protein [Gemmatimonadaceae bacterium] diamond 117 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae   Gemmatimonadaceae bacterium
32666313 32666313 PRJNA289590_P_NODE_22420_length_186_cov_1.518248_g22196_i0 PRJNA289590 22420 186 1.518248 2.82394128 Longimicrobium sp. 2029185 Bacteria Bacteria 112 1.23e-27   NR HEX8694235.1 2029185 g22196 i0 78.3 2.87096774193548 60 13 96.8 0 185 6 56 115 HEX8694235.1 crosslink repair DNA glycosylase YcaQ family protein [Longimicrobium sp.] diamond 534 112 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;