RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA289590" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27439743 27439743 PRJNA289590_P_NODE_29463_length_164_cov_1.356522_g29239_i0 PRJNA289590 29463 164 1.356522 2.22469608 Bacteria 2 Bacteria Bacteria 43.5 0.00652   NR HYL62576.1 2032687 g29239 i0 46.2 4.77439024390244 39 21 71.3 0 43 159 152 190 HYL62576.1 LytTR family DNA-binding domain-containing protein [Candidatus Methylomirabilis sp.] diamond 783 43.9 0.990888382687927 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis sp.
31148013 31148013 PRJNA289590_P_NODE_555_length_2312_cov_27.441008_g455_i0 PRJNA289590 555 2312 27.441008 634.43610496 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 338 5.049999999999998e-106   NR MDO8336486.1 2026720 g455 i0 52.9 0.441176470588235 340 144 43.1 5 683 1678 7 338 MDO8336486.1 hypothetical protein [Candidatus Saccharibacteria bacterium] diamond 1020 338 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
31798342 31798342 PRJNA289590_P_NODE_12937_length_254_cov_0.956098_g12713_i0 PRJNA289590 12937 254 0.956098 2.42848892 Bacteria 2 Bacteria Bacteria 60.1 3.02e-8   NR MBU4339037.1 2052139 g12713 i0 50 2.39763779527559 72 29 85 2 253 38 172 236 MBU4339037.1 RNA ligase (ATP) [Patescibacteria group bacterium] diamond 609 60.5 0.993388429752066 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;