RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA289590" and tax_clade = "Amoebozoa"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA289590 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30597196 30597196 PRJNA289590_P_NODE_28293_length_166_cov_0.888889_g28069_i0 PRJNA289590 28293 166 0.888889 1.47555574 root 1 Root_unresolved Root_unresolved 52.4 5.27e-6   NR XP_635611.1 352472 g28069 i0 50 10.4819277108434 50 24 90.4 1 150 1 294 342 XP_635611.1 peptidase M24 family protein [Dictyostelium discoideum AX4] diamond 1740 52.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
31988332 31988332 PRJNA289590_P_NODE_9958_length_293_cov_2.631148_g9734_i0 PRJNA289590 9958 293 2.631148 7.70926364 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 107 8.53e-28   NR KAH3756789.1 1580589 g9734 i0 71.8 4.42320819112628 85 24 87 0 257 3 4 88 KAH3756789.1 ribosomal protein L35 [Pelomyxa schiedti] diamond 1296 107 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
32540541 32540541 PRJNA289590_P_NODE_30999_length_162_cov_0.920354_g30775_i0 PRJNA289590 30999 162 0.920354 1.49097348 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 50.4 3.38e-6   NR KAH3756107.1 1580589 g30775 i0 45.5 2.14814814814815 44 22 77.8 1 133 8 4 47 KAH3756107.1 hypothetical protein Pelo_12095 [Pelomyxa schiedti] diamond 348 50.4 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;