RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA287283" and tax_phylum = "Ciliophora"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 5 ✖

tax_clade 1

bioproject 1

  • PRJNA287283 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8025474 8025474 PRJNA287283_P_NODE_7307_length_202_cov_1.127517_g7083_i0 PRJNA287283 7307 202 1.127517 2.27758434 Trichodina centrostrigata 1682383 SAR_Eukaryotes SAR_Eukaryotes 374 3.3e-99   NTclustered gi|1685826183|gb|MN071233.1| 1682383 g7083 i0 100 57.6683168316832 202 0 100 0 1 202 771 570 Trichodina centrostrigata isolate Q1 internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11649 374 1 Eukaryota Sar   Ciliophora Oligohymenophorea Mobilida Trichodinidae Trichodina Trichodina centrostrigata
16949569 16949569 PRJNA287283_P_NODE_10274_length_176_cov_0.910569_g10050_i0 PRJNA287283 10274 176 0.910569 1.60260144 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 207 2.99e-49   NTclustered gi|471226989|ref|XM_004032470.1| 5932 g10050 i0 88.757 6.25 169 19 96 0 8 176 237 69 Ichthyophthirius multifiliis ubiquitin family protein, putative (IMG5_120960) mRNA, complete cds blastn 1100 207 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
23324216 23324216 PRJNA287283_P_NODE_10439_length_175_cov_0.918033_g10215_i0 PRJNA287283 10439 175 0.918033 1.60655775 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 254 3.77e-63   NTclustered gi|471229096|ref|XM_004035365.1| 5932 g10215 i0 93.529 0.971428571428571 170 11 97 0 1 170 230 61 Ichthyophthirius multifiliis ribosomal phosphoprotein, putative (IMG5_099550) mRNA, complete cds blastn 170 254 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
28684957 28684957 PRJNA287283_P_NODE_8727_length_182_cov_0.868217_g8503_i0 PRJNA287283 8727 182 0.868217 1.58015494 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 94.7 8e-21   NR XP_004030402.1 5932 g8503 i0 90.6 0.873626373626374 53 5 87.4 0 160 2 524 576 XP_004030402.1 hypothetical protein IMG5_161750 [Ichthyophthirius multifiliis] diamond 159 94.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis
31938939 31938939 PRJNA287283_P_NODE_8537_length_183_cov_0.861538_g8313_i0 PRJNA287283 8537 183 0.861538 1.57661454 Ichthyophthirius multifiliis 5932 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.37e-17   NR XP_004039002.1 5932 g8313 i0 85.7 0.688524590163934 42 6 68.9 0 58 183 1 42 XP_004039002.1 hypothetical protein IMG5_038240 [Ichthyophthirius multifiliis] diamond 126 80.9 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida   Ichthyophthirius Ichthyophthirius multifiliis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;