RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA287283", tax_kingdom = "Bacillati" and tax_phylum = "Chloroflexota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA287283 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27232172 27232172 PRJNA287283_P_NODE_8743_length_182_cov_0.868217_g8519_i0 PRJNA287283 8743 182 0.868217 1.58015494 Anaerolineae bacterium 2052143 Bacteria Bacteria 87.8 2.16e-18   NR HLF25218.1 2052143 g8519 i0 68.4 0.93956043956044 57 18 94 0 182 12 233 289 HLF25218.1 sialidase family protein [Anaerolineae bacterium] diamond 171 87.8 1 Bacteria   Bacillati Chloroflexota Anaerolineae       Anaerolineae bacterium
29000860 29000860 PRJNA287283_P_NODE_6088_length_234_cov_1.138122_g5864_i0 PRJNA287283 6088 234 1.138122 2.66320548 Chloroflexota bacterium 2026724 Bacteria Bacteria 42.4 0.0442   NR MBI4498881.1 2026724 g5864 i0 41 0.782051282051282 61 30 78.2 1 38 220 374 428 MBI4498881.1 ammonium transporter [Chloroflexota bacterium] diamond 183 42.4 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;