RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA287283" and tax_clade = "PVC group"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

analysis 2

tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 4 ✖

bioproject 1

  • PRJNA287283 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22048639 22048639 PRJNA287283_P_NODE_5818_length_241_cov_1.765957_g5594_i0 PRJNA287283 5818 241 1.765957 4.25595637 Parachlamydiales bacterium 2052178 Bacteria Bacteria 255 1.54e-63   NTclustered gi|2874253843|emb|OY969899.1| 2052178 g5594 i0 87.111 165.46887966805 225 29 93 0 1 225 2634321 2634097 MAG: Parachlamydiales bacterium isolate MFD00082.bin.c.1 genome assembly, chromosome: 1 blastn 39878 255 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales     Parachlamydiales bacterium
22736010 22736010 PRJNA287283_P_NODE_4938_length_272_cov_1.972603_g4714_i0 PRJNA287283 4938 272 1.972603 5.36548016 Chlamydiia 204429 Bacteria Bacteria 246 1.0699999999999999e-60   NTclustered gi|2874253688|emb|OY969414.1| 174324 g4714 i0 83.273 191.610294117647 275 38 99 7 3 272 2363962 2363691 MAG: uncultured Chlamydiales bacterium isolate MFD04463.bin.c.14 genome assembly, chromosome: 1 blastn 52118 248 0.991935483870968 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
29284473 29284473 PRJNA287283_P_NODE_6709_length_216_cov_1.030675_g6485_i0 PRJNA287283 6709 216 1.030675 2.226258 Planctomycetota bacterium 2026780 Bacteria Bacteria 51.6 1.92e-5   NR MFH1732068.1 2026780 g6485 i0 66.7 0.625 45 13 59.7 1 8 136 511 555 MFH1732068.1 30S ribosomal protein S1 [Planctomycetota bacterium] diamond 135 51.6 1 Bacteria PVC group Pseudomonadati Planctomycetota         Planctomycetota bacterium
32603408 32603408 PRJNA287283_P_NODE_9180_length_180_cov_0.881890_g8956_i0 PRJNA287283 9180 180 0.88189 1.587402 Schlesneria sp. DSM 1 2762018 Bacteria Bacteria 65.1 1.53e-10   NR WP_373650989.1 3044399 g8956 i0 72.5 0.666666666666667 40 11 66.7 0 122 3 1 40 WP_373650989.1 spermidine synthase [Schlesneria sp. DSM 10557] diamond 120 65.1 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Planctomycetales Planctomycetaceae Schlesneria Schlesneria sp. DSM 10557

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;