RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA287283" and tax_clade = "Bacteria candidate phyla"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA287283 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29586172 29586172 PRJNA287283_P_NODE_9510_length_179_cov_0.857143_g9286_i0 PRJNA287283 9510 179 0.857143 1.53428597 Bacteria 2 Bacteria Bacteria 42.4 0.0207   NR PYM21947.1 2053607 g9286 i0 70.8 2.58100558659218 24 7 40.2 0 2 73 229 252 PYM21947.1 MAG: aquaporin [Candidatus Rokuibacteriota bacterium] diamond 462 42.4 1 Bacteria Bacteria candidate phyla   Candidatus Rokuibacteriota         Candidatus Rokuibacteriota bacterium
32572121 32572121 PRJNA287283_P_NODE_6859_length_212_cov_1.088050_g6635_i0 PRJNA287283 6859 212 1.08805 2.306666 Candidatus Wolfebacteria bacterium 2030812 Bacteria Bacteria 44.7 0.0052   NR MBI4993655.1 2030812 g6635 i0 41.9 0.877358490566038 62 34 87.7 2 11 196 423 482 MBI4993655.1 tail fiber domain-containing protein [Candidatus Wolfebacteria bacterium] diamond 186 44.7 1 Bacteria Bacteria candidate phyla   Candidatus Wolfeibacteriota         Candidatus Wolfebacteria bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;