RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA285816" and tax_phylum = "Chlamydiota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA285816 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1059201 1059201 PRJNA285816_S_NODE_28581_length_163_cov_0.912281_g28479_i0 PRJNA285816 28581 163 0.912281 1.48701803 Pseudomonadati 3379134 Bacteria Bacteria 180 5.97e-41   NTclustered gi|2874253712|emb|OY969554.1| 174324 g28479 i0 86.667 43.1165644171779 165 18 100 4 1 163 1826549 1826387 MAG: uncultured Chlamydiales bacterium isolate MFD04540.bin.c.3 genome assembly, chromosome: 1 blastn 7028 180 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     uncultured Chlamydiales bacterium
11262359 11262359 PRJNA285816_S_NODE_8689_length_244_cov_1.189744_g8587_i0 PRJNA285816 8689 244 1.189744 2.90297536 Candidatus Rhabdochlamydia 292833 Bacteria Bacteria 351 1.9399999999999998e-92   NTclustered gi|2082223669|gb|CP075585.1| 225148 g8587 i0 92.683 159.811475409836 246 14 100 4 1 244 1019600 1019843 Candidatus Rhabdochlamydia porcellionis strain 15C chromosome, complete genome blastn 38994 351 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae Candidatus Rhabdochlamydia Candidatus Rhabdochlamydia porcellionis
13125948 13125948 PRJNA285816_S_NODE_4051_length_337_cov_2.427083_g3949_i0 PRJNA285816 4051 337 2.427083 8.17926971 Parachlamydiales 1963360 Bacteria Bacteria 139 1.55e-36   NR WP_041016496.1 340071 g3949 i0 63.8 12.1246290801187 105 29 93.5 1 22 336 115 210 WP_041016496.1 asparagine--tRNA ligase [Criblamydia sequanensis] diamond 4086 139 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Criblamydiaceae Candidatus Criblamydia Candidatus Criblamydia sequanensis
27565552 27565552 PRJNA285816_S_NODE_25284_length_167_cov_1.322034_g25182_i0 PRJNA285816 25284 167 1.322034 2.20779678 Pseudomonadati 3379134 Bacteria Bacteria 53.9 1.24e-6   NR OGN53385.1 1797595 g25182 i0 44.4 2.91017964071856 54 30 97 0 3 164 128 181 OGN53385.1 MAG: hypothetical protein A2Z85_04555 [Chlamydiae bacterium GWA2_50_15] diamond 486 53.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiae bacterium GWA2_50_15
28337447 28337447 PRJNA285816_S_NODE_16386_length_194_cov_1.020690_g16284_i0 PRJNA285816 16386 194 1.02069 1.9801386 Candidatus Protochlamydia sp. 2687294 Bacteria Bacteria 46.2 0.00118   NR MBA2368943.1 2687294 g16284 i0 40.6 0.989690721649485 64 36 95.9 1 186 1 87 150 MBA2368943.1 2-oxoglutarate dehydrogenase E1 component [Candidatus Protochlamydia sp.] diamond 192 46.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp.
31482570 31482570 PRJNA285816_S_NODE_2576_length_416_cov_1.912807_g2474_i0 PRJNA285816 2576 416 1.912807 7.95727712 PVC group 1783257 Bacteria Bacteria 119 3.0099999999999993e-28   NR WP_059059927.1 389348 g2474 i0 50.5 4.61538461538461 109 53 78.6 1 1 327 484 591 WP_059059927.1 phosphoenolpyruvate carboxykinase (GTP) [Candidatus Protochlamydia naegleriophila] diamond 1920 120 0.991666666666667 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;