RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA285816", tax_phylum = "Candidatus Peregrinibacteriota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Candidatus Peregrinibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA285816 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20773482 20773482 PRJNA285816_S_NODE_21177_length_176_cov_5.614173_g21075_i0 PRJNA285816 21177 176 5.614173 9.88094448 Candidatus Peribacteria bacterium 2053688 Bacteria Bacteria 54.7 0.004   NTclustered gi|2225492643|gb|CP082927.1| 2053688 g21075 i0 96.875 16.0625 32 1 18 0 105 136 510090 510121 MAG: Candidatus Peribacteria bacterium isolate LakeFargette_0920_ALND_MAG_52_24 chromosome, complete genome blastn 2827 54.7 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria       Candidatus Peribacteria bacterium
27042538 27042538 PRJNA285816_S_NODE_21602_length_175_cov_2.031746_g21500_i0 PRJNA285816 21602 175 2.031746 3.5555555 Candidatus Peribacterales bacterium 2711152 Bacteria Bacteria 68.2 1.61e-11   NR HLC75743.1 2711152 g21500 i0 61.4 2.93142857142857 57 22 97.7 0 4 174 271 327 HLC75743.1 SulP family inorganic anion transporter [Candidatus Peribacterales bacterium] diamond 513 68.2 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacterales bacterium
29568755 29568755 PRJNA285816_S_NODE_29610_length_162_cov_0.920354_g29508_i0 PRJNA285816 29610 162 0.920354 1.49097348 Candidatus Peribacterales bacterium 2711152 Bacteria Bacteria 49.3 5.93e-5   NR HLC75743.1 2711152 g29508 i0 49 0.907407407407407 49 25 90.7 0 6 152 337 385 HLC75743.1 SulP family inorganic anion transporter [Candidatus Peribacterales bacterium] diamond 147 49.3 1 Bacteria Bacteria candidate phyla   Candidatus Peregrinibacteriota Candidatus Peribacteria Candidatus Peribacterales     Candidatus Peribacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;