RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA285816" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27660623 27660623 PRJNA285816_S_NODE_26824_length_165_cov_1.189655_g26722_i0 PRJNA285816 26824 165 1.189655 1.96293075 PVC group 1783257 Bacteria Bacteria 74.3 8.91e-14   NR HDL09991.1 2035772 g26722 i0 63 7.81818181818182 54 20 98.2 0 164 3 144 197 HDL09991.1 lysine--tRNA ligase [Candidatus Omnitrophota bacterium] diamond 1290 74.3 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
28260179 28260179 PRJNA285816_S_NODE_1026_length_638_cov_1.881154_g948_i0 PRJNA285816 1026 638 1.881154 12.00176252 Bacteria 2 Bacteria Bacteria 255 2.89e-79   NR OGX05199.1 1801834 g948 i0 56.9 28.6504702194357 209 87 98.3 1 628 2 60 265 OGX05199.1 MAG: homospermidine synthase [Omnitrophica bacterium RIFCSPLOWO2_12_FULL_50_11] diamond 18279 257 0.992217898832685 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica bacterium RIFCSPLOWO2_12_FULL_50_11
31780771 31780771 PRJNA285816_S_NODE_4397_length_325_cov_2.782609_g4295_i0 PRJNA285816 4397 325 2.782609 9.04347925 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 47.8 0.00163   NR MBI4431682.1 2035772 g4295 i0 41.1 0.516923076923077 56 32 50.8 1 2 166 442 497 MBI4431682.1 saccharopine dehydrogenase NADP-binding domain-containing protein [Candidatus Omnitrophota bacterium] diamond 168 47.8 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;