RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA285816", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26933593 26933593 PRJNA285816_S_NODE_27462_length_164_cov_1.356522_g27360_i0 PRJNA285816 27462 164 1.356522 2.22469608 Bacillati 1783272 Bacteria Bacteria 60.1 9.61e-9   NR MBP5445001.1 2053494 g27360 i0 61.7 3.4390243902439 47 18 86 0 163 23 73 119 MBP5445001.1 aldehyde dehydrogenase family protein [Acholeplasmatales bacterium] diamond 564 60.5 0.993388429752066 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales     Acholeplasmatales bacterium
27136905 27136905 PRJNA285816_S_NODE_10582_length_226_cov_1.429379_g10480_i0 PRJNA285816 10582 226 1.429379 3.23039654 Candidatus Pelethenecus faecipullorum 2840900 Bacteria Bacteria 42.4 0.0376   NR HIT49767.1 2840900 g10480 i0 41.2 0.676991150442478 51 30 67.7 0 45 197 45 95 HIT49767.1 sugar phosphate isomerase/epimerase [Candidatus Pelethenecus faecipullorum] diamond 153 42.4 1 Bacteria   Bacillati Mycoplasmatota Mollicutes     Candidatus Pelethenecus Candidatus Pelethenecus faecipullorum
31970693 31970693 PRJNA285816_S_NODE_5518_length_294_cov_1.897959_g5416_i0 PRJNA285816 5518 294 1.897959 5.57999946 Ureaplasma sp. 1965234 Bacteria Bacteria 44.7 0.00678   NR MDE6289454.1 1965234 g5416 i0 35.1 0.959183673469388 94 45 88.8 4 283 23 42 126 MDE6289454.1 GIY-YIG nuclease family protein [Ureaplasma sp.] diamond 282 44.7 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Mycoplasmoidaceae Ureaplasma Ureaplasma sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;