RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA285816", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 3 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA285816 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29144771 29144771 PRJNA285816_S_NODE_789_length_702_cov_2.430322_g723_i0 PRJNA285816 789 702 2.430322 17.06086044 root 1 Root_unresolved Root_unresolved 67 1.04e-8   NR WP_116591430.1 190975 g723 i0 35.1 1.56837606837607 134 75 53.8 5 453 76 167 296 WP_116591430.1 Ig-like domain-containing protein [Methanobrevibacter thaueri] diamond 1101 67 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter thaueri
31907432 31907432 PRJNA285816_S_NODE_8717_length_243_cov_3.706186_g8615_i0 PRJNA285816 8717 243 3.706186 9.00603198 Methanobrevibacter sp. 66852 Archaea Archaea 55.8 8.89e-7   NR WP_407421068.1 66852 g8615 i0 35.9 0.962962962962963 78 49 96.3 1 241 8 311 387 WP_407421068.1 C1 family peptidase [Methanobrevibacter sp.] diamond 234 55.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32065574 32065574 PRJNA285816_S_NODE_5318_length_299_cov_1.744000_g5216_i0 PRJNA285816 5318 299 1.744 5.21456 Methanocaldococcus villosus 667126 Archaea Archaea 57 1.39e-7   NR WP_004592618.1 667126 g5216 i0 43 0.792642140468227 79 27 79.3 2 294 58 80 140 WP_004592618.1 30S ribosomal protein S19e [Methanocaldococcus villosus] diamond 237 57 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales Methanocaldococcaceae Methanocaldococcus Methanocaldococcus villosus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;