RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA285816", tax_clade = "Metamonada" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 7 ✖

tax_clade 1

  • Metamonada · 7 ✖

bioproject 1

  • PRJNA285816 · 7 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27168753 27168753 PRJNA285816_S_NODE_3062_length_383_cov_1.892216_g2960_i0 PRJNA285816 3062 383 1.892216 7.24718728 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 148 2.21e-42   NR XP_068360038.1 1144522 g2960 i0 60.3 1.97389033942559 126 50 98.7 0 378 1 32 157 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 756 148 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27313271 27313271 PRJNA285816_S_NODE_6983_length_266_cov_2.129032_g6881_i0 PRJNA285816 6983 266 2.129032 5.66322512 Tritrichomonadida 740972 Parabasalia other_Eukaryota 89 2.58e-18   NR XP_067776132.1 135588 g6881 i0 66.7 1.35338345864662 60 20 67.7 0 3 182 474 533 XP_067776132.1 Mob1/phocein family protein [Histomonas meleagridis] diamond 360 89 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27327073 27327073 PRJNA285816_S_NODE_8403_length_247_cov_2.101010_g8301_i0 PRJNA285816 8403 247 2.10101 5.1894947 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 55.1 1.85e-6   NR XP_067770529.1 135588 g8301 i0 35.3 2.63562753036437 85 49 99.6 2 1 246 875 956 XP_067770529.1 C2 domain containing protein [Histomonas meleagridis] diamond 651 55.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27358766 27358766 PRJNA285816_S_NODE_11103_length_222_cov_1.919075_g11001_i0 PRJNA285816 11103 222 1.919075 4.2603465 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 70.9 3.61e-12   NR XP_068352465.1 1144522 g11001 i0 53.1 6.63513513513514 64 30 86.5 0 222 31 302 365 XP_068352465.1 uncharacterized protein TRFO_34231 [Tritrichomonas foetus] diamond 1473 70.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30611144 30611144 PRJNA285816_S_NODE_9413_length_236_cov_1.278075_g9311_i0 PRJNA285816 9413 236 1.278075 3.016257 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 71.6 4.8e-13   NR XP_068365014.1 1144522 g9311 i0 60.4 0.673728813559322 53 21 67.4 0 160 2 15 67 XP_068365014.1 Ras-related protein RABA2b [Tritrichomonas foetus] diamond 159 71.6 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31622713 31622713 PRJNA285816_S_NODE_26056_length_166_cov_1.316239_g25954_i0 PRJNA285816 26056 166 1.316239 2.18495674 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 53.9 1.44e-6   NR XP_067769345.1 135588 g25954 i0 45.7 3.79518072289157 46 25 83.1 0 9 146 239 284 XP_067769345.1 AMP-binding enzyme family protein [Histomonas meleagridis] diamond 630 53.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31875657 31875657 PRJNA285816_S_NODE_17677_length_188_cov_2.712230_g17575_i0 PRJNA285816 17677 188 2.71223 5.0989924 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 61.2 5.24e-9   NR XP_001310013.1 412133 g17575 i0 49.1 2.63297872340426 55 28 87.8 0 22 186 325 379 XP_001310013.1 protein serine/threonine kinase protein [Trichomonas vaginalis G3] diamond 495 61.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;