contig_metadata
14 rows where bioproject = "PRJNA285816", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13125826 | 13125826 | PRJNA285816_S_NODE_21451_length_176_cov_1.157480_g21349_i0 | PRJNA285816 | 21451 | 176 | 1.15748 | 2.0371648 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 94.4 | 8.8e-21 | NR | HUQ99184.1 | 2026741 | g21349 | i0 | 70.2 | 8.74431818181818 | 57 | 17 | 97.2 | 0 | 175 | 5 | 246 | 302 | HUQ99184.1 L-glutamate gamma-semialdehyde dehydrogenase [Gemmatimonadaceae bacterium] | diamond | 1539 | 94.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 27629072 | 27629072 | PRJNA285816_S_NODE_21004_length_177_cov_1.484375_g20902_i0 | PRJNA285816 | 21004 | 177 | 1.484375 | 2.62734375 | Bacteria | 2 | Bacteria | Bacteria | 93.6 | 5.4e-21 | NR | MDQ3208419.1 | 2026742 | g20902 | i0 | 73.7 | 6.77966101694915 | 57 | 15 | 96.6 | 0 | 175 | 5 | 82 | 138 | MDQ3208419.1 acetyl-CoA C-acyltransferase [Gemmatimonadota bacterium] | diamond | 1200 | 93.6 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 29000848 | 29000848 | PRJNA285816_S_NODE_25028_length_168_cov_0.865546_g24926_i0 | PRJNA285816 | 25028 | 168 | 0.865546 | 1.45411728 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 42.4 | 0.0183 | NR | TVR50587.1 | 2448054 | g24926 | i0 | 47.8 | 1.64285714285714 | 46 | 23 | 80.4 | 1 | 29 | 163 | 177 | 222 | TVR50587.1 MAG: hypothetical protein EA421_16965 [Gemmatimonadales bacterium] | diamond | 276 | 42.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 29568759 | 29568759 | PRJNA285816_S_NODE_5590_length_292_cov_2.181070_g5488_i0 | PRJNA285816 | 5590 | 292 | 2.18107 | 6.3687244 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 48.5 | 5.8e-4 | NR | MDB4951426.1 | 2026742 | g5488 | i0 | 45.9 | 0.76027397260274 | 74 | 32 | 71.9 | 4 | 14 | 223 | 29 | 98 | MDB4951426.1 rRNA (uracil-5-)-methyltransferase RumA [Gemmatimonadota bacterium] | diamond | 222 | 48.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 29600130 | 29600130 | PRJNA285816_S_NODE_15910_length_196_cov_1.027211_g15808_i0 | PRJNA285816 | 15910 | 196 | 1.027211 | 2.01333356 | Gemmatimonadales bacterium | 2448054 | Bacteria | Bacteria | 42 | 0.0211 | NR | HKH84897.1 | 2448054 | g15808 | i0 | 44.2 | 0.658163265306122 | 43 | 24 | 65.8 | 0 | 67 | 195 | 26 | 68 | HKH84897.1 globin family protein [Gemmatimonadales bacterium] | diamond | 129 | 42 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadales bacterium | |||
| 29600153 | 29600153 | PRJNA285816_S_NODE_5610_length_292_cov_1.275720_g5508_i0 | PRJNA285816 | 5610 | 292 | 1.27572 | 3.7251024 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 50.1 | 1.71e-4 | NR | MBC8088690.1 | 2026741 | g5508 | i0 | 36.4 | 0.678082191780822 | 66 | 33 | 66.8 | 2 | 95 | 289 | 283 | 340 | MBC8088690.1 hypothetical protein [Gemmatimonadaceae bacterium] | diamond | 198 | 50.1 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 29934010 | 29934010 | PRJNA285816_S_NODE_2251_length_443_cov_1.855330_g2149_i0 | PRJNA285816 | 2251 | 443 | 1.85533 | 8.2191119 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 150 | 2.86e-41 | NR | MCL7958114.1 | 2026742 | g2149 | i0 | 54.6 | 7.05643340857788 | 130 | 59 | 88 | 0 | 441 | 52 | 216 | 345 | MCL7958114.1 fatty acid desaturase [Gemmatimonadota bacterium] | diamond | 3126 | 150 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 30548035 | 30548035 | PRJNA285816_S_NODE_26673_length_165_cov_1.508621_g26571_i0 | PRJNA285816 | 26673 | 165 | 1.508621 | 2.48922465 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 48.5 | 1.11e-4 | NR | MDH4349816.1 | 2026742 | g26571 | i0 | 47.1 | 0.927272727272727 | 51 | 26 | 92.7 | 1 | 155 | 3 | 11 | 60 | MDH4349816.1 APC family permease [Gemmatimonadota bacterium] | diamond | 153 | 48.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 30642712 | 30642712 | PRJNA285816_S_NODE_26013_length_166_cov_1.333333_g25911_i0 | PRJNA285816 | 26013 | 166 | 1.333333 | 2.21333278 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 40 | 0.0468 | NR | PYP32577.1 | 2026742 | g25911 | i0 | 41.7 | 1.08433734939759 | 60 | 29 | 97.6 | 2 | 164 | 3 | 48 | 107 | PYP32577.1 MAG: hypothetical protein DMD47_03595 [Gemmatimonadota bacterium] | diamond | 180 | 40 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 30737511 | 30737511 | PRJNA285816_S_NODE_12134_length_215_cov_1.879518_g12032_i0 | PRJNA285816 | 12134 | 215 | 1.879518 | 4.0409637 | Gemmatimonadaceae bacterium | 2026741 | Bacteria | Bacteria | 41.6 | 0.0348 | NR | HMA24902.1 | 2026741 | g12032 | i0 | 57.9 | 0.530232558139535 | 38 | 16 | 53 | 0 | 175 | 62 | 72 | 109 | HMA24902.1 DUF302 domain-containing protein [Gemmatimonadaceae bacterium] | diamond | 114 | 41.6 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonadaceae bacterium | ||
| 30832401 | 30832401 | PRJNA285816_S_NODE_3134_length_379_cov_2.390909_g3032_i0 | PRJNA285816 | 3134 | 379 | 2.390909 | 9.06154511 | Longimicrobiales bacterium | 2910168 | Bacteria | Bacteria | 52 | 3.47e-5 | NR | MDP2956777.1 | 2910168 | g3032 | i0 | 36.4 | 1.29815303430079 | 99 | 57 | 76.8 | 2 | 377 | 87 | 67 | 161 | MDP2956777.1 hypothetical protein [Longimicrobiales bacterium] | diamond | 492 | 52 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Longimicrobiia | Longimicrobiales | Longimicrobiales bacterium | |||
| 31450758 | 31450758 | PRJNA285816_S_NODE_22396_length_173_cov_1.370968_g22294_i0 | PRJNA285816 | 22396 | 173 | 1.370968 | 2.37177464 | Pseudomonadati | 3379134 | Bacteria | Bacteria | 55.1 | 6.23e-7 | NR | GDX87922.1 | 2026742 | g22294 | i0 | 43.4 | 2.6878612716763 | 53 | 30 | 91.9 | 0 | 170 | 12 | 197 | 249 | GDX87922.1 adenosine deaminase [Gemmatimonadota bacterium] | diamond | 465 | 55.5 | 0.992792792792793 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 31496440 | 31496440 | PRJNA285816_S_NODE_14136_length_204_cov_1.341935_g14034_i0 | PRJNA285816 | 14136 | 204 | 1.341935 | 2.7375474 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 40.4 | 0.0359 | NR | MCY3808007.1 | 2026742 | g14034 | i0 | 38.5 | 0.955882352941177 | 65 | 37 | 91.2 | 1 | 195 | 10 | 3 | 67 | MCY3808007.1 type II toxin-antitoxin system Phd/YefM family antitoxin [Gemmatimonadota bacterium] | diamond | 195 | 40.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 32477168 | 32477168 | PRJNA285816_S_NODE_8599_length_245_cov_1.137755_g8497_i0 | PRJNA285816 | 8599 | 245 | 1.137755 | 2.78749975 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 55.5 | 6.67e-7 | NR | MBT4504232.1 | 2026742 | g8497 | i0 | 56.1 | 0.502040816326531 | 41 | 18 | 50.2 | 0 | 5 | 127 | 173 | 213 | MBT4504232.1 phosphoenolpyruvate carboxykinase (GTP) [Gemmatimonadota bacterium] | diamond | 123 | 55.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;