RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA285816", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Methylomirabilota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Candidatus Methylomirabilota · 3 ✖

tax_clade 1

  • Bacteria candidate phyla · 3 ✖

bioproject 1

  • PRJNA285816 · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4199223 4199223 PRJNA285816_S_NODE_29564_length_162_cov_0.920354_g29462_i0 PRJNA285816 29564 162 0.920354 1.49097348 uncultured Methylomirabilota bacterium 991135 Bacteria Bacteria 52.8 0.013   NTclustered gi|2874253892|emb|OY970067.1| 991135 g29462 i0 100 0.172839506172839 28 0 17 0 33 60 5332353 5332380 MAG: uncultured candidate division NC10 bacterium isolate MFD01231.bin.c.1 genome assembly, chromosome: 1 blastn 28 52.8 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota         uncultured Methylomirabilota bacterium
28495457 28495457 PRJNA285816_S_NODE_5567_length_293_cov_1.049180_g5465_i0 PRJNA285816 5567 293 1.04918 3.0740974 Candidatus Methylomirabilales bacterium 3159508 Bacteria Bacteria 96.7 3.9900000000000005e-21   NR MFQ5655999.1 3159508 g5465 i0 51.1 0.9419795221843 92 42 93.2 2 14 286 264 353 MFQ5655999.1 purple acid phosphatase family protein [Candidatus Methylomirabilales bacterium] diamond 276 96.7 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales     Candidatus Methylomirabilales bacterium
32760745 32760745 PRJNA285816_S_NODE_10620_length_226_cov_1.084746_g10518_i0 PRJNA285816 10620 226 1.084746 2.45152596 Candidatus Methylomirabilis sp. 2032687 Bacteria Bacteria 49.3 1.39e-4   NR HXJ80968.1 2032687 g10518 i0 32.9 0.929203539823009 70 45 90.3 1 205 2 69 138 HXJ80968.1 glycosyltransferase family 10 [Candidatus Methylomirabilis sp.] diamond 210 49.3 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;