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contig_metadata

18 rows where bioproject = "PRJNA285816", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 18 ✖

tax_clade 1

  • Amoebozoa · 18 ✖

bioproject 1

  • PRJNA285816 · 18 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4887119 4887119 PRJNA285816_S_NODE_5844_length_286_cov_302.000000_g5742_i0 PRJNA285816 5844 286 302 863.72 root 1 Root_unresolved Root_unresolved 135 2.5500000000000003e-27   NTclustered gi|300078496|gb|GU001158.1| 5778 g5742 i0 82.822 12.6223776223776 163 16 53 6 1 152 3399 3560 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 3610 135 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8025151 8025151 PRJNA285816_S_NODE_1167_length_604_cov_5.565766_g1076_i0 PRJNA285816 1167 604 5.565766 33.61722664 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 416 1.84e-111   NTclustered gi|421976335|gb|JQ519484.1| 5778 g1076 i0 80.141 81.0132450331126 569 103 93 9 22 585 253 816 Vermamoeba vermiformis clone JGHverm1 beta-tubulin gene, partial cds blastn 48932 416 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
8711794 8711794 PRJNA285816_S_NODE_11747_length_217_cov_467.416667_g11645_i0 PRJNA285816 11747 217 467.416667 1014.29416739 Tubulinea 555369 Tubulinea other_Eukaryota 383 5.98e-102   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g11645 i0 99.524 96.9124423963134 210 1 97 0 1 210 1676 1467 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 21030 383 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
14400887 14400887 PRJNA285816_S_NODE_1412_length_550_cov_11.429142_g1315_i0 PRJNA285816 1412 550 11.429142 62.860281 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 186 5.259999999999998e-54   NR AAP88974.1 5775 g1315 i0 77.5 3.72 111 25 60.5 0 2 334 278 388 AAP88974.1 S-adenosylmethionine synthetase 2 [Amoeba proteus] diamond 2046 187 0.994652406417112 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
15674839 15674839 PRJNA285816_S_NODE_4193_length_332_cov_4.462898_g4091_i0 PRJNA285816 4193 332 4.462898 14.81682136 Centropyxis laevigata 318528 Tubulinea other_Eukaryota 608 1.479999999999999e-169   NTclustered gi|61655689|gb|AY848965.1| 318528 g4091 i0 99.699 6.94578313253012 332 1 100 0 1 332 37 368 Centropyxis laevigata small subunit ribosomal RNA gene, partial sequence blastn 2306 608 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Centropyxidae Centropyxis Centropyxis laevigata
16361599 16361599 PRJNA285816_S_NODE_1393_length_555_cov_312.798419_g1297_i0 PRJNA285816 1393 555 312.798419 1736.03122545 Tubulinea 555369 Tubulinea other_Eukaryota 821 0   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g1297 i0 93.502 78.2738738738739 554 33 99 3 2 553 620 1172 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 43442 821 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
18910572 18910572 PRJNA285816_S_NODE_20255_length_179_cov_333.776923_g20153_i0 PRJNA285816 20255 179 333.776923 597.46069217 Tubulinea 555369 Tubulinea other_Eukaryota 320 3.76e-83   NTclustered gi|11527302|gb|AF293895.1|AF293895 136450 g20153 i0 98.889 100.245810055866 180 1 100 1 1 179 1478 1299 Echinamoeba exundans small subunit ribosomal RNA gene, complete sequence blastn 17944 320 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida   Echinamoebidae Echinamoeba Echinamoeba exundans
24011083 24011083 PRJNA285816_S_NODE_379_length_954_cov_20.555801_g331_i0 PRJNA285816 379 954 20.555801 196.10234154 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 283 9.82e-92   NR AAY21191.1 5778 g331 i0 63.6 0.742138364779874 236 85 74.2 1 111 818 12 246 AAY21191.1 Rpl7A, partial [Vermamoeba vermiformis] diamond 708 283 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
24598167 24598167 PRJNA285816_S_NODE_25480_length_167_cov_0.881356_g25378_i0 PRJNA285816 25480 167 0.881356 1.47186452 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 97.1 9.89e-22   NR AKT93973.1 5778 g25378 i0 78.8 1.86826347305389 52 11 93.4 0 1 156 114 165 AKT93973.1 NADH dehydrogenase subunit 11 [Vermamoeba vermiformis] diamond 312 97.1 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
26947475 26947475 PRJNA285816_S_NODE_29222_length_162_cov_1.345133_g29120_i0 PRJNA285816 29222 162 1.345133 2.17911546 Amoeba proteus 5775 Tubulinea other_Eukaryota 64.7 2.27e-10   NR AKN09691.1 5775 g29120 i0 50 2 54 27 100 0 162 1 754 807 AKN09691.1 Tom70 [Amoeba proteus] diamond 324 64.7 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Amoebidae Amoeba Amoeba proteus
27168740 27168740 PRJNA285816_S_NODE_14082_length_204_cov_2.012903_g13980_i0 PRJNA285816 14082 204 2.012903 4.10632212 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 104 3.3e-24   NR ABD62815.1 5778 g13980 i0 77.6 0.985294117647059 67 15 98.5 0 203 3 714 780 ABD62815.1 mitochondrial single-subunit RNA polymerase [Vermamoeba vermiformis] diamond 201 104 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28053172 28053172 PRJNA285816_S_NODE_2045_length_463_cov_1.425121_g1943_i0 PRJNA285816 2045 463 1.425121 6.59831023 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 229 3.23e-73   NR ABD46560.1 5778 g1943 i0 75.2 0.965442764578834 149 37 96.5 0 15 461 1 149 ABD46560.1 lactate dehydrogenase-like protein, partial [Vermamoeba vermiformis] diamond 447 229 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
28084761 28084761 PRJNA285816_S_NODE_29265_length_162_cov_1.168142_g29163_i0 PRJNA285816 29265 162 1.168142 1.89239004 Copromyxa protea 931554 Tubulinea other_Eukaryota 88.2 1.03e-18   NR BAN33737.1 931554 g29163 i0 81.1 19.6296296296296 53 10 98.1 0 160 2 11 63 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 3180 88.2 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
30422082 30422082 PRJNA285816_S_NODE_493_length_859_cov_6.423457_g439_i0 PRJNA285816 493 859 6.423457 55.17749563 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 190 3.6999999999999994e-57   NR ABD72565.1 5778 g439 i0 64.2 0.478463329452852 137 49 47.8 0 127 537 1 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 411 190 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
31622714 31622714 PRJNA285816_S_NODE_30656_length_152_cov_2.019417_g30554_i0 PRJNA285816 30656 152 2.019417 3.06951384 Saccamoeba lacustris 704142 Tubulinea other_Eukaryota 53.9 1.05e-6   NR AFX73097.1 704142 g30554 i0 58.1 2.54605263157895 43 18 84.9 0 129 1 145 187 AFX73097.1 elongation factor 2 alpha, partial [Saccamoeba lacustris] diamond 387 53.9 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Saccamoeba Saccamoeba lacustris
31717636 31717636 PRJNA285816_S_NODE_1117_length_615_cov_20.628975_g1030_i0 PRJNA285816 1117 615 20.628975 126.86819625 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 172 3.14e-51   NR ABD72565.1 5778 g1030 i0 59 0.678048780487805 139 55 67.8 1 118 534 1 137 ABD72565.1 chitinase-like protein cluster B, partial [Vermamoeba vermiformis] diamond 417 172 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32445595 32445595 PRJNA285816_S_NODE_7759_length_255_cov_1.975728_g7657_i0 PRJNA285816 7759 255 1.975728 5.0381064 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 126 2.66e-34   NR ABD46563.1 5778 g7657 i0 69.9 1.95294117647059 83 24 97.6 1 6 254 46 127 ABD46563.1 succinyl-diaminopimelate desuccinylase-like protein A, partial [Vermamoeba vermiformis] diamond 498 126 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
32872750 32872750 PRJNA285816_S_NODE_10160_length_229_cov_2.772222_g10058_i0 PRJNA285816 10160 229 2.772222 6.34838838 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 132 5.469999999999999e-38   NR AAX57202.1 5778 g10058 i0 91.4 6.74672489082969 70 6 91.7 0 229 20 59 128 AAX57202.1 vacuolar protein sorting protein 26, partial [Vermamoeba vermiformis] diamond 1545 132 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;