RNAquarium Metadata Server
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contig_metadata

5 rows where bioproject = "PRJNA283169" and tax_phylum = "Mollusca"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mollusca · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA283169 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
371772 371772 PRJNA283169_P_NODE_3721_length_216_cov_0.868263_g3658_i0 PRJNA283169 3721 216 0.868263 1.87544808 Bradybaena similaris 145626 Mollusca Mollusca 54.7 0.005   NTclustered gi|2912983111|dbj|AP039588.1| 145626 g3658 i0 100 0.134259259259259 29 0 13 0 95 123 55970186 55970214 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 7, sequence blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
4198896 4198896 PRJNA283169_P_NODE_4044_length_208_cov_1.440252_g3981_i0 PRJNA283169 4044 208 1.440252 2.99572416 Gigantopelta aegis 1735272 Mollusca Mollusca 99 2.31e-16   NTclustered gi|2034280398|ref|XM_041514371.1| 1735272 g3981 i0 82.051 19.2115384615385 117 19 56 2 83 198 1069 954 PREDICTED: Gigantopelta aegis dynamin-1-like (LOC121384128), transcript variant X4, mRNA blastn 3996 99 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neomphalida Peltospiridae Gigantopelta Gigantopelta aegis
18223492 18223492 PRJNA283169_P_NODE_7755_length_163_cov_1.166667_g7692_i0 PRJNA283169 7755 163 1.166667 1.90166721 Mytilus trossulus 6551 Mollusca Mollusca 132 1.7e-26   NTclustered gi|2693874225|ref|XR_010105052.1| 6551 g7692 i0 90.909 63.1226993865031 99 8 61 1 1 99 2986 3083 PREDICTED: Mytilus trossulus large subunit ribosomal RNA (LOC134703602), rRNA blastn 10289 132 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Mytilida Mytilidae Mytilus Mytilus trossulus
18223501 18223501 PRJNA283169_P_NODE_955_length_398_cov_1.627507_g893_i0 PRJNA283169 955 398 1.627507 6.47747786 Biomphalaria glabrata 6526 Mollusca Mollusca 102 3.73e-17   NTclustered gi|2502160024|ref|XM_056025062.1| 6526 g893 i0 94.03 8.2286432160804 67 4 17 0 209 275 118 184 PREDICTED: Biomphalaria glabrata histone H2A (LOC129925359), mRNA blastn 3275 102 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
31179629 31179629 PRJNA283169_P_NODE_2855_length_246_cov_0.944162_g2792_i0 PRJNA283169 2855 246 0.944162 2.32263852 Gigantopelta aegis 1735272 Mollusca Mollusca 54.3 3.15e-6   NR XP_041355333.1 1735272 g2792 i0 61.5 0.475609756097561 39 15 47.6 0 200 84 369 407 XP_041355333.1 signal peptide peptidase-like 2B [Gigantopelta aegis] diamond 117 54.3 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Neomphalida Peltospiridae Gigantopelta Gigantopelta aegis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;